PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148333_P01
Common NameEREB202, LOC100283060
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 423aa    MW: 44525.3 Da    PI: 4.5702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148333_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19129178255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a +++++g
  GRMZM2G148333_P01 129 QYRGIRRRP-WGKWAAEIRDPSK---GVRVWLGTYSTAEEAARAYDAEARRIRG 178
                        69*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.37E-29129187No hitNo description
SMARTSM003801.1E-33129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.657129186IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21129187IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-30129188IPR001471AP2/ERF domain
PfamPF008472.9E-11130178IPR001471AP2/ERF domain
PRINTSPR003674.4E-11130141IPR001471AP2/ERF domain
PRINTSPR003674.4E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MCGGAILSGF IPPSGVPAAA AAAKKKQQRR ATADLLWPGP GKKGAPREED FEADFREFER  60
GLGEDDDVDG AGDEVQELPL PEPARLAFAA AVGAPRTAVD GVMTPKDGEG DMPTTATNSA  120
ANKRRRKNQY RGIRRRPWGK WAAEIRDPSK GVRVWLGTYS TAEEAARAYD AEARRIRGKK  180
AKVNFRDEAA AAAGAQKAPA ATTPTACGNA ARLGPPPPPP KFRADEVFGN MNGGTGSNDL  240
FAIMFAFSDS SSKVVRVEPG EGAAGFLPAD LLPGSKRSAA NMLLLSDQSS DSYGSCDLGW  300
EWDWDDDTMT SDYASVFAPA APSNVVPAWY TQGGPVSKRT RSSYGYGAAM PGGFDPETNY  360
QYQPLPYVVE SSPSDGASTD DMDCLQMMRA GDVPQDGASS GGGGGDGGDI WSLDELLMAA  420
GAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18128185462ATERF1
3gcc_A5e-18128185462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122136KRRRKNQYRGIRRRP
2124135RRKNQYRGIRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1582230.0aerial organ| cell culture| ear| endosperm| meristem| ovary| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148333
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148333_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0411710.0BT041171.1 Zea mays full-length cDNA clone ZM_BFc0183N14 mRNA, complete cds.
GenBankEU9633130.0EU963313.1 Zea mays clone 260772 ethylene response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149434.10.0uncharacterized protein LOC100283060
TrEMBLA0A3L6G0B30.0A0A3L6G0B3_MAIZE; Ethylene-responsive transcription factor 1
TrEMBLB4FVN30.0B4FVN3_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G148333_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-23ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]