PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146514_P03
Common NameLOC100273243, ZEAMMB73_909252
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 407aa    MW: 44822.6 Da    PI: 8.7683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146514_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-112144326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C++++rtG C++G +CkF+H+
  GRMZM2G146514_P03 21 EPDCSYYMRTGMCRFGMTCKFNHP 44
                       789********************8 PP
2zf-CCCH391.4e-126690327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tGtCk+G++CkF+H++
  GRMZM2G146514_P03 66 QPECQYYLKTGTCKFGATCKFHHPR 90
                       799********************96 PP
3zf-CCCH36.21e-11112136327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+G++CkF+H++
  GRMZM2G146514_P03 112 EKECAYYLRTGQCKFGSTCKFHHSQ 136
                        679********************97 PP
4zf-CCCH39.41e-12272297227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  GRMZM2G146514_P03 272 DQPECQFYMKTGDCKFGAVCKFHHPR 297
                        689*********************96 PP
5zf-CCCH36.67.7e-12317343127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+ r+G Ck+G++CkF H++
  GRMZM2G146514_P03 317 PGEPICSFYNRYGMCKFGPNCKFDHPM 343
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-41845IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2531846IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-72144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-42445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2446391IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66692IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-106690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-56991IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7109138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3109137IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5115136IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53270298IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4276298IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291316344IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4321341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MWQMNLEEAM ELGPYPERVG EPDCSYYMRT GMCRFGMTCK FNHPADRKLA VAAARMKGEY  60
PQRIGQPECQ YYLKTGTCKF GATCKFHHPR EKAAMATRVQ LNELGYPLRP NEKECAYYLR  120
TGQCKFGSTC KFHHSQPSTM MVAVRGSVYS PGQSATSPGQ HAYQGAVTSW PLSRSASFIA  180
SPRWPGHSSY AQVIVPPGLV QVPGWSPYTA QIGSSSSEDQ QRTPGAAQYY TGSRQSGTSI  240
GDQGMFSSYQ AGSVPVGLYA VQRENLFPER PDQPECQFYM KTGDCKFGAV CKFHHPRERI  300
IPTPNCALSP LGLPLRPGEP ICSFYNRYGM CKFGPNCKFD HPMGNAMYGQ APSPASEAPA  360
PRRMLAHVPP SHPEASPDGG SGRSRRIAHS DSQQIPSGER SAEREAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847110.0cell culture| ear| endosperm| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146514
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146514_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0405710.0BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds.
GenBankBT0636430.0BT063643.1 Zea mays full-length cDNA clone ZM_BFc0089D01 mRNA, complete cds.
GenBankBT0674520.0BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141157.10.0Zinc finger CCCH domain-containing protein 33
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLB4FTY30.0B4FTY3_MAIZE; Zinc finger CCCH domain-containing protein 33
TrEMBLK0D9N00.0K0D9N0_MAIZE; C3H11 C3H type transcription factor (Fragment)
STRINGGRMZM2G146514_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]