PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146514_P01
Common NameLOC100273243, ZEAMMB73_909252
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 443aa    MW: 47830.8 Da    PI: 8.5091
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146514_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38e-115780326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++ C++++rtG C++G +CkF+H+
  GRMZM2G146514_P01 57 EPDCSYYMRTGMCRFGMTCKFNHP 80
                       789********************8 PP
2zf-CCCH38.81.5e-12102126327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  GRMZM2G146514_P01 102 QPECQYYLKTGTCKFGATCKFHHPR 126
                        799********************96 PP
3zf-CCCH361.1e-11148172327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +++rtG+Ck+G++CkF+H++
  GRMZM2G146514_P01 148 EKECAYYLRTGQCKFGSTCKFHHSQ 172
                        679********************97 PP
4zf-CCCH39.21.1e-12308333227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  GRMZM2G146514_P01 308 DQPECQFYMKTGDCKFGAVCKFHHPR 333
                        689*********************96 PP
5zf-CCCH36.48.6e-12353379127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+ r+G Ck+G++CkF H++
  GRMZM2G146514_P01 353 PGEPICSFYNRYGMCKFGPNCKFDHPM 379
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2535482IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-45481IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-75780IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-46081IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-699126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24499127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6102128IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5105127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3145173IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7145174IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5151172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53306334IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5306333IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5309335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4312334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291352380IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7352379IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8354379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAAPSGGGGG GAGEGSSSAA AAATIGVHGV DQVAEAMWQM NLEEAMELGP YPERVGEPDC  60
SYYMRTGMCR FGMTCKFNHP ADRKLAVAAA RMKGEYPQRI GQPECQYYLK TGTCKFGATC  120
KFHHPREKAA MATRVQLNEL GYPLRPNEKE CAYYLRTGQC KFGSTCKFHH SQPSTMMVAV  180
RGSVYSPGQS ATSPGQHAYQ GAVTSWPLSR SASFIASPRW PGHSSYAQVI VPPGLVQVPG  240
WSPYTAQIGS SSSEDQQRTP GAAQYYTGSR QSGTSIGDQG MFSSYQAGSV PVGLYAVQRE  300
NLFPERPDQP ECQFYMKTGD CKFGAVCKFH HPRERIIPTP NCALSPLGLP LRPGEPICSF  360
YNRYGMCKFG PNCKFDHPMG NAMYGQAPSP ASEAPAPRRM LAHVPPSHPE ASPDGGSGRS  420
RRIAHSDSQQ IPSGERSAER EAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847110.0cell culture| ear| endosperm| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146514
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146514_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0405710.0BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds.
GenBankBT0674520.0BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141157.10.0Zinc finger CCCH domain-containing protein 33
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLB4FTY30.0B4FTY3_MAIZE; Zinc finger CCCH domain-containing protein 33
TrEMBLK0D9N00.0K0D9N0_MAIZE; C3H11 C3H type transcription factor (Fragment)
STRINGGRMZM2G146514_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]