PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141955_P03 | ||||||||
Common Name | pco127567(465), YAB11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 207aa MW: 23073.2 Da PI: 9.0656 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.5 | 8.4e-71 | 7 | 177 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ ++ +++l+++ +++ +l+ +++ ++ + s+s+s+ GRMZM2G141955_P03 7 APADHVCYVHCNFCNTVLAVSVPGNSMLSMVTVRCGHCTNLLSVNLRALMHSVPEQDQLQQENI-RVHGTLREHHQCGGGHHLELGSSSSSR 97 5689******************************************************987654.466677766666555554444433333 PP YABBY 97 .ssekl....senedeevprvppvirP.PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ ++ne+ ++ + rP PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl GRMZM2G141955_P03 98 fRLPMMmsyaPQNEHLLQEQTLNNARPaPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177 0222223443222222223333456766**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-71 | 8 | 177 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-8 | 121 | 171 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.5E-5 | 126 | 171 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSSAQIAPAD HVCYVHCNFC NTVLAVSVPG NSMLSMVTVR CGHCTNLLSV NLRALMHSVP 60 EQDQLQQENI RVHGTLREHH QCGGGHHLEL GSSSSSRFRL PMMMSYAPQN EHLLQEQTLN 120 NARPAPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLNSG 180 REGGKNKLVD EAVAAVAVAP KKIQGFY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118059 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141955 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141955_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039787 | 0.0 | BT039787.1 Zea mays full-length cDNA clone ZM_BFc0045D16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140845.1 | 1e-155 | uncharacterized protein LOC100272921 | ||||
Swissprot | Q2QM17 | 2e-85 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | B4FRP9 | 1e-154 | B4FRP9_MAIZE; C2C2-YABBY transcription factor | ||||
STRING | GRMZM2G141955_P03 | 1e-155 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 | Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-53 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141955_P03 |
Entrez Gene | 100272921 |