PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G140901_P02 | ||||||||
Common Name | ZEAMMB73_610227, Zm.84421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 74aa MW: 8356.49 Da PI: 4.4318 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.5 | 7.8e-17 | 10 | 60 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkk 50 lppGfrF P+deelv++yL+ kv++++l + + + evd++++ePw+Lp + GRMZM2G140901_P02 10 LPPGFRFYPSDEELVCHYLHGKVANEQLAGAGAaMVEVDLHTHEPWELPGT 60 79*************************8776666**************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-17 | 7 | 61 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.948 | 10 | 74 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-8 | 11 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANEQLAGA GAAMVEVDLH THEPWELPGT 60 YSYSVPWQLI QLFA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.84421 | 3e-95 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G140901 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G140901_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084978 | 7e-93 | BT084978.2 Zea mays full-length cDNA clone ZM_BFb0218P20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008679189.1 | 1e-34 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 3e-14 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A3L6F8U3 | 3e-33 | A0A3L6F8U3_MAIZE; NAC domain-containing protein 79 | ||||
TrEMBL | K7UK16 | 3e-33 | K7UK16_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | GRMZM2G140901_P01 | 6e-34 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.2 | 9e-19 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G140901_P02 |
Publications ? help Back to Top | |||
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