PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G28530.2
Common Nameanac074, F20O9.220, NAC074
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 315aa    MW: 36034.9 Da    PI: 5.3162
Description NAC domain containing protein 74
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G28530.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.22.4e-3410123199
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                  lppGfrFhP+deelv++yL++k+++k+         +              + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat s
  AT4G28530.2  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdvD---DddddvdealkgstDLVEIDLHICEPWELPDVAKLNAKEWYFFSFRDRKYATGYRTNRATVS 104
                  79***********************99665540...1455667777777469**************87788999************************ PP

          NAM  81 gyWkatgkdkevlskkgel 99 
                  gyWkatgkd++v++ ++++
  AT4G28530.2 105 GYWKATGKDRTVMDPRTRQ 123
                  *************985554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-368135IPR003441NAC domain
PROSITE profilePS5100532.0210196IPR003441NAC domain
PfamPF023653.0E-1611118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE ALKGSTDLVE  60
IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR ATVSGYWKAT GKDRTVMDPR  120
TRQLEDWVLC RVFNKGRDSS LQDNNYYNND NQTQRLEVND APDLNYNNQL PPLLSSPPHN  180
HQHEKMKIQV CDQWEQLMKQ PSRTTGHPYH HHCHHQTIAC GWEQMMIGSL SSPSSHGPDH  240
ESLLNLLYVD NNNSVNISGD HHQNYEKILL SSLDMTSLDH DKTCMGSSSD GGMVSDLHME  300
CGGLSFETEN ILAFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-271012415112Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.320090.0seed| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306880100.0
Genevisible253774_at0.0
Expression AtlasAT4G28530-
AtGenExpressAT4G28530-
ATTED-IIAT4G28530-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G28530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G28530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0217490.0AL021749.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project).
GenBankAL1615730.0AL161573.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69.
GenBankAY0874700.0AY087470.1 Arabidopsis thaliana clone 35774 mRNA, complete sequence.
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119074.10.0NAC domain containing protein 74
TrEMBLO494610.0O49461_ARATH; NAC domain containing protein 74
STRINGAT4G28530.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Zhao C,Craig JC,Petzold HE,Dickerman AW,Beers EP
    The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl.
    Plant Physiol., 2005. 138(2): p. 803-18
    [PMID:15923329]
  4. Ko JH,Yang SH,Park AH,Lerouxel O,Han KH
    ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana.
    Plant J., 2007. 50(6): p. 1035-48
    [PMID:17565617]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  6. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  7. Pei H, et al.
    An NAC transcription factor controls ethylene-regulated cell expansion in flower petals.
    Plant Physiol., 2013. 163(2): p. 775-91
    [PMID:23933991]