PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G137387_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 451aa    MW: 51371.9 Da    PI: 8.526
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G137387_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-26222272151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        k+ien +nrqvtfskRr g++KKA+E+S+LCda++ viifs +g++yeyss
  GRMZM2G137387_P01 222 KKIENPTNRQVTFSKRRMGLFKKANEVSILCDAQIRVIIFSGSGRMYEYSS 272
                        68***********************************************96 PP
2K-box43.11.8e-152983721488
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                        +++  qe++++k+e ++L+    +++ edL s s+++L +Leqq+e sl k+  +K+ell +q+ e +++e  + 
  GRMZM2G137387_P01 298 QQKIIQEMTRMKDERNSLRMIMARYMAEDLASFSVQDLSNLEQQIEFSLYKVHLRKQELLDQQLLEIRQREMHMP 372
                        68889******************************************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.24214274IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-21216236IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-25220292IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-29220273IPR002100Transcription factor, MADS-box
CDDcd002657.21E-32220291No hitNo description
PfamPF003192.2E-23223270IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-21236251IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-21251272IPR002100Transcription factor, MADS-box
PfamPF014861.3E-13294374IPR002487Transcription factor, K-box
PROSITE profilePS5129710.563298388IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MQYQIGPADT YWIVSTTKLQ NLTQYQAVEH VNPTLVPTDL DVGTMVTFPV FCQCPAATDN  60
VSALVTYVMQ PGDTYLNLRH LNFNNFKGQG IPKVFPSTSK LQLIILYESF KSIVKASIGK  120
DAPSPRCAPR PLPTLVVVME GAVTSQRMSV AIPLEQSITP VLQDFMNLNI FYLPVYYCGE  180
TYHLSGVKVL HGLDKVLEGG AVVMTLRDHS IPSNGDINEK LKKIENPTNR QVTFSKRRMG  240
LFKKANEVSI LCDAQIRVII FSGSGRMYEY SSPPWRIASV FDRYLKAPST HFEEMDIQQK  300
IIQEMTRMKD ERNSLRMIMA RYMAEDLASF SVQDLSNLEQ QIEFSLYKVH LRKQELLDQQ  360
LLEIRQREMH MPAEQGGYLC LMVKNLRSFN LSHILDCLKL NFTTTSLLHQ LWTRGIVVQD  420
VINTIGGHLL AVHLLPICIH KKFQDITLLI R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G137387
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G137387_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385320.0BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691330.0BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
GenBankHQ8587370.0HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G137387_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-31MIKC_MADS family protein