PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G135703_P01 | ||||||||
Common Name | DOF19, LOC103650966, Zm.2286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 334aa MW: 34942.8 Da PI: 4.5319 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.6e-38 | 35 | 91 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ GRMZM2G135703_P01 35 APSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 91 568***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-34 | 18 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.4E-32 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.891 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLSSHHEAAM LPYAPGPPPS LLLDRRSYKQ GGEAAPSCPR CDSPNTKFCY YNNYSLSQPR 60 YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR GKSSLRSAAD SIASGGGGRD AAFGHRFPGP 120 VRPDLVLEGM VGNHPSNPAG QAAMPGGVPA AADGSTIDLA MLYAKFLNHP PAEEGVGAVT 180 PPESAGQVDE AFGASSDLMS PGALAPVQFD PCQDGFGEWS GVPVSSAGPS STASTTAATT 240 MLCTDVSVQA AFGELNFAMD QNCFDSLGLP TDDVGNLSSS WCSIVPGLST LEDAKYDLDS 300 FPDDALSLHD EGMISGTDHD WSVDCQGLET LYMP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G135703 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G135703_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726975 | 0.0 | KJ726975.1 Zea mays clone pUT3676 C2C2-DOF transcription factor (DOF19) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674783.1 | 0.0 | dof zinc finger protein 4 | ||||
TrEMBL | A0A060CVI0 | 0.0 | A0A060CVI0_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | GRMZM2G135703_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 1e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G135703_P01 |
Entrez Gene | 103650966 |