PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G133168_P01 | ||||||||
Common Name | LOC103649611, Zm.134152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22193 Da PI: 12.1431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.3 | 1.8e-13 | 54 | 92 | 3 | 45 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a GRMZM2G133168_P01 54 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPRPEMAARA 92 9****998.**********843...6***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-14 | 53 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.252 | 53 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-20 | 53 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-13 | 53 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-9 | 54 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.96E-16 | 54 | 92 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDMAMSQHSS DTSSTSSYSS DPSSTSSTSP RAAAGTSNGK KRPHDGAAAA APAYRGVRMR 60 AWGKWVSEIR EPRKKSRIWL GTFPRPEMAA RAPCSTSRPS RATSRARPPW RRATSRPPPR 120 APPSCTSQSL NDLMSPDGSP WRRWPWPPSW CSTTWRLCGW RTWWSWARAR PSIARGRRAM 180 GSTPPPPVST LSLSCGTTSC Y |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G133168 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G133168_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954878 | 0.0 | EU954878.1 Zea mays clone 1489920 mRNA sequence. | |||
GenBank | EU955030 | 0.0 | EU955030.1 Zea mays clone 1502552 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6MHA8 | 1e-129 | A0A1D6MHA8_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G133168_P02 | 1e-133 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G133168_P01 |
Entrez Gene | 103649611 |