PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132794_P01
Common NameGRAS58, LOC103636850, Zm.99698
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 630aa    MW: 67547.3 Da    PI: 6.6294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132794_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.93.2e-922146292374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilk 92 
                         +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  
  GRMZM2G132794_P01 214 AQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWAS 304
                        589************************************************************99888744.44444444446********* PP

               GRAS  93 fshltaNqaIleavege...............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetge 163
                        f+h++aN aIle++  +                r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ + +      ++ ++e+++
  GRMZM2G132794_P01 305 FGHVAANGAILESFLDAaaaaaassssssqhpPRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAGVpssaaAQRVMREIAQ 396
                        ************98665555566667777777789************************8889********996655888889999****** PP

               GRAS 164 rLakfAeelgvpfefnvlvak.rledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                        rL+kfA+ +gvpf+f+++++  +l+ l+l+ L +         ala+n+v +l  +   ++  +  rd+++  +++l+P+vv+vve++ad+ 
  GRMZM2G132794_P01 397 RLEKFARLMGVPFSFRAVHHAgDLAGLDLDGLGLGLreggaATALAINCVNALRGVA--PGGARR-RDAFVASLRRLEPRVVTVVEEDADLV 485
                        *****************976669999999988554433766789************8..555555.9***********************94 PP

               GRAS 250 se...............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                        ++                F++ f+e l+++sa +dsle+++p++s+er  +Er+  gr+iv++vac  +e++er+et ++W +r+++aGF+p
  GRMZM2G132794_P01 486 AAsepssssageadaeaAFMKVFTEGLRFFSAYMDSLEESFPKASNERLALERA-AGRAIVDLVACPASESVERRETGASWARRMRSAGFSP 576
                        4447999***********************************************.************************************* PP

               GRAS 327 vplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                        v++s+++a+++++llr++  +g+++ e        + ++l Wk++p+v++SaWr
  GRMZM2G132794_P01 577 VAFSDDVADDMRSLLRRYR-EGWTLREPgaddgaAAGVFLAWKEQPVVWTSAWR 629
                        ******************9.99****7767666566778**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.442187604IPR005202Transcription factor GRAS
PfamPF035141.1E-89214629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHQQHHQQ AAAAAASSSP DQHHHHQSPY SSRSTSRSND TSTGSRSSPS  60
SYHTHNHHYH SSHPHSHYSS ASYYYDPAGS GSGSAGYYYY DHHQPPPPPP YQEECGNDHG  120
FYMDEDFSSS SSSRSRHFQS SSRAPPSSSP TPPHAQPQPP PASTSSGAGA GALFEAADFS  180
FPQVDIDLDF SSPASSSGAA ASSSGGGGAG RWAAQLLLEC ARAVAARDSQ RVQQLMWMLN  240
ELASPYGDVD QKLASYFLQG LFARLTTSGP RTLRTLAAAS DRNTSFDSTR RTALRFQELS  300
PWASFGHVAA NGAILESFLD AAAAAAASSS SSSQHPPRLH ILDLSNTFCT QWPTLLEALA  360
TRSSDDTPHL SITTVVPTAG VPSSAAAQRV MREIAQRLEK FARLMGVPFS FRAVHHAGDL  420
AGLDLDGLGL GLREGGAATA LAINCVNALR GVAPGGARRR DAFVASLRRL EPRVVTVVEE  480
DADLVAASEP SSSSAGEADA EAAFMKVFTE GLRFFSAYMD SLEESFPKAS NERLALERAA  540
GRAIVDLVAC PASESVERRE TGASWARRMR SAGFSPVAFS DDVADDMRSL LRRYREGWTL  600
REPGADDGAA AGVFLAWKEQ PVVWTSAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-15717963015420Protein SHORT-ROOT
5b3h_E1e-15717963015420Protein SHORT-ROOT
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132794
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}.
UniprotTISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132794_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270150.0KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310268.10.0protein SHORT-ROOT 2-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A060CVM90.0A0A060CVM9_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G132794_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Representative plantOGRP27551332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]