PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G132057_P01
Common NameZEAMMB73_736759, Zm.92965
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 271aa    MW: 28131.2 Da    PI: 9.5627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G132057_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057392221
                       EETTTTEEESSHHHHHHHHH CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                       +C+ Cgk+F+++  L  H+r
  GRMZM2G132057_P01 73 PCTECGKRFPSWKALFGHMR 92
                       5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00347294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6197299IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-77394No hitNo description
PfamPF139122.4E-97496IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-47494IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-7177204No hitNo description
SMARTSM003551.2182204IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-11182206IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369182204IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MATPVRPAAA APARRPPQPL PLPAAPHHDT MLTLSLALPL PLPPPVFVVR ALSPDGGGVA  60
RVRSSPTGDD TPPCTECGKR FPSWKALFGH MRCHPERQWR GMTPPHFRQH RTVVAAADLQ  120
FTEQERETAT SLLMLGGGRP AGAGKGKKSV LGASPSAKKV TCGASKSASS PPPTVPRCDD  180
DHKCSVCARG FATGQALGGH KRCHWERTTA CAEGTTTVAA IATPGACSPS ATSSSQAAPA  240
TTLDLNLPPP LPQKSDGYGS LDATLDLKLG I
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.929650.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G132057
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G132057_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751880.0EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407559.10.0zinc finger protein ZAT3
TrEMBLK7V3700.0K7V370_MAIZE; Nucleic acid binding protein
STRINGGRMZM2G132057_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-29C2H2-like zinc finger protein