PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126817_P01
Common NameLOC103639545, ZEAMMB73_190639
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 317aa    MW: 34853.4 Da    PI: 6.6821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126817_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1577.8e-49171433128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s
  GRMZM2G126817_P01  17 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRS 107
                        9*************************99.99***************99999****************************************9 PP

                NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++gl+ktLvfy+grap+g+ktdWvm+eyrl
  GRMZM2G126817_P01 108 SadAKRVIGLRKTLVFYQGRAPRGTKTDWVMNEYRL 143
                        9777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-596166IPR003441NAC domain
PROSITE profilePS5100555.5715166IPR003441NAC domain
PfamPF023658.7E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAMTAGAPSM EVEQDLPGFR FHPTEEELLG FYLSRVVHGK QLHFDIIGTL NIYRHDPWDL  60
PAMAKIGERE WYFFVPRDRK AGSGGRPNRT TERGFWKATG SDRAIRSSAD AKRVIGLRKT  120
LVFYQGRAPR GTKTDWVMNE YRLPDHAAAA APPPKEDMVL CKIYRKATPL KELEQRASTM  180
EEMQRRSDAA EAASASLVQA VGSADDNYLS SGDTHDISVL QIPASSSPAP SGDSYGGPAL  240
REAQTEAADA TTVTVASASL VHAACMAGPA ARHGDLPTPQ VPTHLGVADW TQMQDPFMLR  300
SLWQDQLFFS PLAHLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-491716822170NAC domain-containing protein 19
3swm_B2e-491716822170NAC domain-containing protein 19
3swm_C2e-491716822170NAC domain-containing protein 19
3swm_D2e-491716822170NAC domain-containing protein 19
3swp_A2e-491716822170NAC domain-containing protein 19
3swp_B2e-491716822170NAC domain-containing protein 19
3swp_C2e-491716822170NAC domain-containing protein 19
3swp_D2e-491716822170NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126817
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126817_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660508.10.0NAC transcription factor 32
SwissprotQ10S651e-137NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLK7WH160.0K7WH16_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G126817_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.19e-84NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]