PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126566_P02
Common NameLOC103632720, Zm.98360
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 289aa    MW: 31765.4 Da    PI: 4.7985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126566_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.2e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEde+lv      G  +W+++++  g+ R++k+c++rw +yl
  GRMZM2G126566_P02 14 KGPWSAEEDEKLVTFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding54.52.7e-1770111447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         + eE+   +d+++qlG++ W++Ia++++ gRt++++k++w+++
  GRMZM2G126566_P02  70 LSSEEETTVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                        589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-19562IPR009057Homeodomain-like
PROSITE profilePS5129413.365961IPR017930Myb domain
SuperFamilySSF466891.54E-2611108IPR009057Homeodomain-like
SMARTSM007177.2E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
CDDcd001672.14E-81661No hitNo description
PROSITE profilePS5129426.55162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2563116IPR009057Homeodomain-like
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
CDDcd001672.45E-1171112No hitNo description
PfamPF002498.6E-1571111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWSAE EDEKLVTFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SSEEETTVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPATHKPLH PQPAAPPPTQ QEQDTGGSPE EEGEKADAVM MAAATPIIGH ETAPFFTDEE  180
EMLAHLLDDI DDFPPAAYSP DDSSSPSSSS SASRSSHSAS VVTAPSSSGA GGSSVADGER  240
PLQMVEWPES MWLDDDVVPG LATTPWEFED DNPFLAYQRN NALFDHQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.983600.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126566
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126566_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837350.0BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855210.0BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856250.0BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652685.10.0transcription factor MYB20
TrEMBLA0A1D6I4070.0A0A1D6I407_MAIZE; Typical P-type R2R3 Myb protein
TrEMBLA0A3L6DYL90.0A0A3L6DYL9_MAIZE; Protein ODORANT1
STRINGGRMZM2G126566_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-86myb domain protein 20