PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G126148_P01 | ||||||||
Common Name | LOC100383956, THX38, ZEAMMB73_122216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Trihelix | ||||||||
Protein Properties | Length: 436aa MW: 49782.6 Da PI: 6.9668 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.3 | 5.5e-25 | 119 | 215 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++++++ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk++ ++ + + +++++ + ++ GRMZM2G126148_P01 119 KWTDSMVKLLITAVSYTGDDHGADSgggrrniaitQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLIDILGMGtACNVVANPAL 210 7*****************99999866677778888********************************************9955999999999 PP trihelix 82 fdqle 86 +d+++ GRMZM2G126148_P01 211 LDSMN 215 99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.6E-20 | 117 | 241 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MEGNDLPPGN MLQGAPYDSL DLHGDSMAKH APNSGKQIFS SSQMPGTFTM SMTRATEPDD 60 FPGFQFKEHG KSDDHHHHQY HSHHQKNCMS DGEEHDMAED ATDTPSGKGK KGSAWHRMKW 120 TDSMVKLLIT AVSYTGDDHG ADSGGGRRNI AITQKKGKWK AISKVMGERG CHVSPQQCED 180 KFNDLNKRYK RLIDILGMGT ACNVVANPAL LDSMNHLSDK MKDNAKKILS SKHLFYEEMC 240 SYHNNNRANL PEDHALQHSL LLALRCKEEH DLRRASGDAD EDDRSADSDY GENDEEQYPV 300 HTRMREPSTT KRKRHRDVAL VTSNSHEGSE RSDPHDVTVD INKAFTDATN MVLLQQDLAS 360 QAIEIQKRRL QIEAKELELT KQRHKWERFR KKKDREIERM ALENEHMVIE NKRLELELRH 420 KELELELKLK GKGNHP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 391 | KQRHKWERFRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23017 | 0.0 | ear| meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G126148 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G126148_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068719 | 0.0 | BT068719.1 Zea mays full-length cDNA clone ZM_BFb0370B05 mRNA, complete cds. | |||
GenBank | KJ727948 | 0.0 | KJ727948.1 Zea mays clone pUT6046 trihelix transcription factor (THX38) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353781.1 | 0.0 | uncharacterized protein LOC100383956 | ||||
Refseq | XP_008677660.1 | 0.0 | hypothetical protein | ||||
TrEMBL | A0A3L6F5B7 | 0.0 | A0A3L6F5B7_MAIZE; Uncharacterized protein | ||||
TrEMBL | C0PKA0 | 0.0 | C0PKA0_MAIZE; Trihelix transcription factor | ||||
STRING | GRMZM2G126148_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 | Representative plant | OGRP2796 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-85 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G126148_P01 |
Entrez Gene | 100383956 |