PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G125653_P02 | ||||||||
Common Name | WRKY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 23275.1 Da PI: 9.1883 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.5e-30 | 66 | 125 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +++ tYegeHnh+ GRMZM2G125653_P02 66 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQRSAEDSAMLVATYEGEHNHP 125 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-29 | 62 | 127 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-26 | 63 | 127 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-35 | 66 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-25 | 67 | 125 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.152 | 68 | 127 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYASQVAARR SPDGRKRSRD SLEPSNSGDA NAAVESAALS DEGTCRRIKL TRVCTKIDPS 60 DTTLTVKDGY QWRKYGQKVT RDNPSPRAYF RCAYAPSCPV KKKVQRSAED SAMLVATYEG 120 EHNHPSPTRA GELPSSTSIN SSGPAITLDL TRNGAGAVRG LDAAAEVPGL KRLCQEIASP 180 DFRTALVEQM ARSLTKDPKF TDALAAAILQ QLPEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 66 | 127 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26589 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G125653 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G125653_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035304 | 0.0 | BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds. | |||
GenBank | BT068493 | 0.0 | BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds. | |||
GenBank | EU518772 | 0.0 | EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001120723.1 | 1e-156 | uncharacterized protein LOC100147737 | ||||
Swissprot | Q6IEK5 | 3e-99 | WRK76_ORYSI; WRKY transcription factor WRKY76 | ||||
TrEMBL | B1Q040 | 1e-155 | B1Q040_MAIZE; Putative WRKY transcription factor 40 | ||||
STRING | GRMZM2G125653_P01 | 1e-155 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-53 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G125653_P02 |