PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G123387_P02 | ||||||||
Common Name | LOC100285549, WRKY101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 103aa MW: 12024.6 Da PI: 9.5634 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.6e-33 | 23 | 81 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v +tYeg+H+h+ GRMZM2G123387_P02 23 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVMTTYEGRHTHS 81 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-34 | 8 | 81 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-29 | 15 | 81 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.61 | 18 | 80 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 23 | 82 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 24 | 80 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MKVRRKMREP RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRSYYRCT HSNCRVKKRV 60 ERLSEDCRMV MTTYEGRHTH SPCSDDADAG GGDHTGSCAF TSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 14 | 80 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 14 | 80 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.138800 | 1e-177 | ear| meristem | ||||
Zm.92948 | 1e-177 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G123387 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G123387_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067982 | 1e-174 | BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds. | |||
GenBank | BT068156 | 1e-174 | BT068156.2 Zea mays full-length cDNA clone ZM_BFb0072A01 mRNA, complete cds. | |||
GenBank | EU972805 | 1e-174 | EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151912.1 | 7e-73 | uncharacterized protein LOC100285549 | ||||
Swissprot | Q93WY4 | 4e-53 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A3L6FZK3 | 2e-71 | A0A3L6FZK3_MAIZE; Putative WRKY transcription factor 12 | ||||
TrEMBL | B6U6E0 | 2e-71 | B6U6E0_MAIZE; WRKY36-superfamily of TFs having WRKY and zinc finger domains | ||||
TrEMBL | C0PI63 | 1e-71 | C0PI63_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G123387_P01 | 5e-72 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 8e-55 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G123387_P02 |
Publications ? help Back to Top | |||
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