PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G123202_P01
Common NameZm.13904
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 292aa    MW: 31336.2 Da    PI: 6.2324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G123202_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W  eEd+llvd+v+  G g+W+  ++  g++R++k+c++rw +yl
  GRMZM2G123202_P01 14 KGQWALEEDKLLVDYVQANGAGNWRMLPKLAGLNRCGKSCRLRWTNYL 61
                       799*******************************************97 PP
2Myb_DNA-binding54.52.8e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg +T+eE+  ++++++  G++ W+tIa+ ++ gRt++++k++w++++
  GRMZM2G123202_P01  67 RGHFTPEEHNSILQLHAIIGNR-WSTIAAQLP-GRTDNEIKNYWNTHM 112
                        899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.331961IPR017930Myb domain
SuperFamilySSF466891.42E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002492.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211568IPR009057Homeodomain-like
CDDcd001671.52E-81761No hitNo description
PROSITE profilePS5129425.55962116IPR017930Myb domain
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PfamPF002493.8E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2669116IPR009057Homeodomain-like
CDDcd001674.68E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRTPCCHSN GIKKGQWALE EDKLLVDYVQ ANGAGNWRML PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGHF TPEEHNSILQ LHAIIGNRWS TIAAQLPGRT DNEIKNYWNT HMKQQLRQEA  120
LAVAVAGEGA GAQLAKAAAA SCPVARHMAQ WETARLEAEA RLSLLSSTSA TTIVTSATAS  180
SSSSTVAPEH AAPDIFLRLW NSEVGDSFRG TAVKGHGPAS SGVPAALPAE LGDDDSSAAS  240
TYGTEAAASD DYQSFLDLAA MEEFGLLQGR LDAFSVLPHV DVFAEAPCCL FE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141167108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G123202
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G123202_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669097.20.0transcription factor MYB41
SwissprotQ9M2D92e-78MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1D6E4R80.0A0A1D6E4R8_MAIZE; P-type R2R3 Myb protein
STRINGGRMZM2G123202_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-66myb domain protein 17