PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G122537_P01 | ||||||||
Common Name | HB82, wox3A, Zm.19184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 24470.7 Da PI: 7.6162 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.6 | 2.5e-14 | 2 | 50 | 14 | 57 |
HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +Le++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ GRMZM2G122537_P01 2 ILEDMYRGgLRTPNASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 50 8******99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 90.9 | 1.2e-29 | 1 | 51 | 14 | 64 |
Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +iLe++y+ GlrtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk GRMZM2G122537_P01 1 MILEDMYRGGLRTPNASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 51 69************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.345 | 1 | 51 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.02E-6 | 2 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-12 | 2 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MILEDMYRGG LRTPNASQIQ QITAHLACYG RIEGKNVFYW FQNHKARDRQ KMRRRLCMSH 60 HLLSCAQYYA AAAHHGHAAF LAAPPPYGHQ LLSPSTTSPT PAAAAAAAAA AYGYYYPATA 120 AFAAPASRCA GNATPPSPTT QLFHYQGGGG LVPTEALGRP EYSLGKLDNF GVALDDVVVS 180 STSGAVVDTM GAPPVAGFEV APPLPAAFSC RPLKTLDLFP GGLEEEQHDV A |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19184 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G122537 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G122537_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 0.0 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106239.1 | 1e-169 | uncharacterized protein LOC100127511 | ||||
TrEMBL | A8Y7V7 | 1e-168 | A8Y7V7_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G122537_P02 | 1e-169 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-30 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G122537_P01 |
Entrez Gene | 100127511 |
Publications ? help Back to Top | |||
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