PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G120151_P01 | ||||||||
Common Name | LOC100281328, TCP23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 298aa MW: 30902.7 Da PI: 8.3073 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.8 | 7.1e-29 | 60 | 129 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+ +i++l+ ++++++ + GRMZM2G120151_P01 60 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQDEIDKLPPLQFPPQgQ 129 78*************************************************************8888831 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-26 | 61 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.448 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MISGNLNNEE LGGGGCTKAE GPGAAGGAGA VVAKSPVLSS SRHWPPSTES RIVRVSRVFG 60 GKDRHSKVRT VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLD AAQDEIDKLP 120 PLQFPPQGQD LVAHLPPSMV APFANVAADR AAAAAAAANA SAAMAEGGKR HCHGGIKGLM 180 GMGLNNSIGL ANATMPLAHG LYYTPGESWT NGGNAAVHDH QVSHGGTSPQ TVAHHSPFSS 240 LLSLAAPGPQ LVFYSPEGGG FAMKEATDHQ FAVDSLDHSQ GQLSLSSARS FLHPGNQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.5830 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G120151 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G120151_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060684 | 0.0 | BT060684.1 Zea mays full-length cDNA clone ZM_BFb0034B20 mRNA, complete cds. | |||
GenBank | BT067152 | 0.0 | BT067152.1 Zea mays full-length cDNA clone ZM_BFb0213O04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147718.1 | 0.0 | uncharacterized LOC100281328 | ||||
TrEMBL | C0HEC8 | 0.0 | C0HEC8_MAIZE; TCP transcription factor | ||||
STRING | GRMZM2G120151_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G120151_P01 |