PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117854_P01
Common Namepco110617
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 257aa    MW: 28416.9 Da    PI: 6.5207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117854_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81.1e-324599155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  GRMZM2G117854_P01 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.74242102IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-3143100IPR009057Homeodomain-like
SuperFamilySSF466899.32E-174499IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2545100IPR006447Myb domain, plants
PfamPF002492.6E-74798IPR001005SANT/Myb domain
PfamPF143797.9E-24132177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMYHAKNFSV PFAPQRAQDN EHASNIGGIG GPNISNPANP VGSGKQRLRW TSDLHNRFVD  60
AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPDSPAEG SKDEKKDSSD  120
SLSNTDSAPG LQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLQM IIEEQQKLGG  180
SIKASEDQKL SDSPPSLDDY PESMQPSPKK PRIDALSPDS ERDTTQPEFE SHLIGPWDHG  240
IAFPVEEFKA GPAMSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.959660.0embryo| meristem| pedicel| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117854
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117854_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331680.0BT033168.1 Zea mays full-length cDNA clone ZM_BFb0166F16 mRNA, complete cds.
GenBankBT0388900.0BT038890.1 Zea mays full-length cDNA clone ZM_BFb0338E13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140465.10.0uncharacterized LOC100272524
RefseqXP_008647496.10.0uncharacterized protein LOC100272524 isoform X1
RefseqXP_020394416.10.0uncharacterized protein LOC100272524 isoform X1
SwissprotQ9SJW05e-74PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1D6M7500.0A0A1D6M750_MAIZE; Myb family transcription factor PHL7
STRINGGRMZM2G117854_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-53G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]