PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G117164_P01 | ||||||||
Common Name | Zm.18537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26413.1 Da PI: 4.7723 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 49 | 102 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ GRMZM2G117164_P01 49 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 102 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.9 | 6.5e-39 | 47 | 140 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++da++++ e+L++e+ +L++++ GRMZM2G117164_P01 47 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQFDAMHARVESLRQEKIALAAQV 138 69*****************9999******************************************************************999 PP HD-ZIP_I/II 92 ke 93 +e GRMZM2G117164_P01 139 DE 140 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.3E-17 | 38 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 43 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 46 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.18E-15 | 48 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 49 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-15 | 49 | 102 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.5E-7 | 75 | 84 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-7 | 84 | 100 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.8E-15 | 104 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MERGDCQFTV VPPRQYDEAQ FMHQLMVAGD QQDPAGAGRG AAAAGGERKR RFTEEQVRSL 60 ETTFHARRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY AALRAQFDAM 120 HARVESLRQE KIALAAQVDE LRGRLNERQD QSGSCEVNDA EAAADDKRNN STSSLVQDDG 180 ATPPPAAVDA SEDSAATGEY YDHVAYEYDG LHDPFVCATP DLWDTWPLLE WNAVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18537 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G117164 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G117164_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972354 | 0.0 | EU972354.1 Zea mays clone 380106 homeobox-leucine zipper protein ATHB-6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151825.1 | 1e-172 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | A2X7U1 | 5e-92 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A1D6HER1 | 1e-172 | A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6 | ||||
STRING | GRMZM2G117164_P01 | 1e-173 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 | Representative plant | OGRP14598 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 7e-34 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G117164_P01 |