PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117007_P01
Common NameC3H7, ZEAMMB73_845546
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 372aa    MW: 40034.3 Da    PI: 8.4134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117007_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-074364526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C+ f+++G C+ Gd C +aHg
  GRMZM2G117007_P01 43 PCPEFRKGGACRKGDGCEYAHG 64
                       8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.12E-53768IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6433866IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-44366IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-54364IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.3717498IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MYNFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRRYSYS CVPCPEFRKG GACRKGDGCE  60
YAHGVFECWL HPAQYRTRLC KDEVGCARRI CFFAHKREEL RAVNPSAVSV GMQMQPTVSP  120
PPPSGLGDML SPAAWPSSPA SRLNKAALGG GRDLDLDQYQ HMLFDTVSSP RANWGSAGGI  180
GSPLPPARAV PDYADLLGSV DAASMLSQLH ALSLKQAGGD MPAYGSMVAD TQPHMATTSP  240
MVGLGSSTAF GLDHSMAKAI LSSRASAFAK RSQSFVDRGG RAPAARSLMS QQAAAAGAPP  300
VLSDWASPDG RLDWGVQGDE LHKFRKSASF AFRARSPPPP AEPDVSWVSS LVKDGHAGDI  360
FAQWPELEQM VA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117007
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117007_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279950.0KJ727995.1 Zea mays clone pUT6115 C3H transcription factor (C3H7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398319.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A1D6FV350.0A0A1D6FV35_MAIZE; Zinc finger CCCH domain-containing protein 29
TrEMBLK7V5R10.0K7V5R1_MAIZE; C3H transcription factor (Fragment)
STRINGGRMZM2G117007_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.14e-81C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]