PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113950_P01
Common NameLOC100286171, NAC26, ZEAMMB73_245435, Zm.739
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 657aa    MW: 71976.5 Da    PI: 4.3839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113950_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.9e-49241601128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksg 81 
                        l+pGfrFhPtdeelv++yL+++v g++l++ ++i+e+d+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat +g
  GRMZM2G113950_P01  24 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEIDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRATPRG 114
                        579***************************.99***************5448999999***********99877777665577********* PP

                NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        yWk+tgkd+ev++ +g+ vg+kktLvf+ grapkge+t+Wvmheyrl
  GRMZM2G113950_P01 115 YWKTTGKDREVHH-RGKPVGMKKTLVFHAGRAPKGERTNWVMHEYRL 160
                        *************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-5517178IPR003441NAC domain
PROSITE profilePS5100555.35424178IPR003441NAC domain
PfamPF023654.3E-2726160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MSLSPLDSSS PPAAAAAAAT EVPLAPGFRF HPTDEELVSY YLRRRVLGRR LRVDAIAEID  60
LYRLEPWDLP SLSRIRSRDA QWYFFARLDR KVAGAGAGGR GGPGNRTNRA TPRGYWKTTG  120
KDREVHHRGK PVGMKKTLVF HAGRAPKGER TNWVMHEYRL LDADGPQDLH VVCRIFQKHG  180
SGPQNGAQYG APYMEEEWEE DDDAIENGST HDASGQIAAT TCAVDEESNE DDENAYCETN  240
RPARVEPSHL PSVHEMLNPP EMAPLQGQDS KETSDGSCSD VAISLEEILQ EPLSNISVEN  300
MHRLEGQNAT DDNISVDNLL SAYPTKDNGY VGQYNTMNGS APADEAHARW PLRTYSNQNY  360
VNGPLADEFF DTGNDTNGVA YSRQQQADGF PAPRQVDESM VFYDAPSDYN LVDGKDDFVY  420
LNDILNEPLG NESLFDGDDM MAYFDATEND FKYDILGSGQ GLDYPLADMP LNFAQKSDKE  480
DKFTFEGISE VPEANPQYGA SSSGSHEDLY TDTEFLGVPT DDTADKTYGN RLASMLGSIP  540
APPAMASEFP PSTGKSAGML SAVSSSSIRF TAGIIQLDGL TFSSGSGQWP LQKNGDLSLL  600
VSFAVEGDVA SKLPVGLGRA TRISTVPMVL RSGFYLFFMS AMILLFSYKV GSCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-43181609140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.7390.0endosperm| meristem| ovary| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113950
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113950_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641330.0BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152531.20.0NAC domain-containing protein 78
TrEMBLC0P7640.0C0P764_MAIZE; NAC domain containing protein 71
STRINGGRMZM2G113950_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Representative plantOGRP1462444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-59NAC domain containing protein 2
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]