PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113888_P01
Common NameLOC100272799, ZEAMMB73_258438
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 402aa    MW: 40658.9 Da    PI: 9.1403
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113888_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-39522281136
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                        aa+k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++  + s +ss+s+ s++   
  GRMZM2G113888_P01  52 AAPKRTSSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVVAATGTGTIPANFTsLNISLRSSGSSFSIPahl 143
                        689*******************************************************************9998888999999977777899 PP

                TCP  89 ....................................kaaksaakskksqksaasalnlak.esrakarar.are.rtrekmriknkl 136
                                                            +  +++ +   s +s +  l+++   s+a a ++ +++ r++++m++++++
  GRMZM2G113888_P01 144 raagprfggargdpwervvgvglgfgaaaedppsatS--SASSPLLLSFHSGSVGLDVSPsPSSAAAGSDlSKKrRWEQEMQQQHQQ 228
                        9999999999999999999****99999999986432..222244555555555555555333333333333333666666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.5E-4357229IPR005333Transcription factor, TCP
PROSITE profilePS5136927.22659113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDVTGDAGGG RRPNFPLQLL EKKEEQPCST SPAVAVGAGA NGSGEMQMKK VAAPKRTSSK  60
DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV VAATGTGTIP  120
ANFTSLNISL RSSGSSFSIP AHLRAAGPRF GGARGDPWER VVGVGLGFGA AAEDPPSATS  180
SASSPLLLSF HSGSVGLDVS PSPSSAAAGS DLSKKRRWEQ EMQQQHQQQY HQQQQMAGYT  240
TQSQMPGAVW MVPSASSNAQ AAAAAGGGGS NANESIWTFP QPASGGGGGA ATVYRGVPSG  300
LHFMNFPAAP MALVPGGGQQ LGLGGPVPVG GAGNDSSGSA SGGGGGEGHM GILAALNAYR  360
AHSAVPDAAP AQNGAEGGSR QRQQHGGGGE RQESVSPPSD GS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.834520.0ear| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113888
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113888_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394620.0BT039462.1 Zea mays full-length cDNA clone ZM_BFc0014J10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140724.10.0uncharacterized protein LOC100272799
SwissprotQ93Z001e-51TCP14_ARATH; Transcription factor TCP14
TrEMBLB4FQS40.0B4FQS4_MAIZE; Uncharacterized protein
STRINGGRMZM2G113888_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-43TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]