PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G112799_P01
Common NameLOC103637538, ZEAMMB73_265437
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 184aa    MW: 19158.1 Da    PI: 5.8138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G112799_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00115476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k+F++   L  H  +H
  GRMZM2G112799_P01 54 FECKTCSKRFPSFQALGGHRTSH 76
                       89**********99998888777 PP
2zf-C2H2120.00066101123123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  Cg  Fs    L  H+r+H
  GRMZM2G112799_P01 101 HECAVCGLEFSMGQALGGHMRRH 123
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-55178No hitNo description
PfamPF139127.7E-125376IPR007087Zinc finger, C2H2
SMARTSM003550.185476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4295481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-499128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-699128No hitNo description
PfamPF139122.2E-11100125IPR007087Zinc finger, C2H2
SMARTSM003550.89101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.092101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVMTLTRHDS GESKEMEGLR AHSEAALLTL SSTTTGGTGT GTGTGTAAAA EGAFECKTCS  60
KRFPSFQALG GHRTSHTRLQ ARTLVGDPAE RYDDRPAARV HECAVCGLEF SMGQALGGHM  120
RRHRGEGPPP PAAHDDDGDG PAQPDRDMPD LNLPPLDDDD GSQAGSRQSG GGRGSGPQLL  180
NLLV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G112799
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G112799_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711164e-72EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657926.11e-130zinc finger protein ZAT8
TrEMBLA0A1D6G8P91e-116A0A1D6G8P9_MAIZE; Zinc finger protein ZAT11
STRINGGRMZM2G112799_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.19e-22C2H2 family protein