PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G108892_P01
Common NameLOC100216887, MYBR84, ZEAMMB73_507949
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 334aa    MW: 35774.5 Da    PI: 10.0666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G108892_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.5e-1599143347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ + ++lG+g+W+ Ia+++ ++Rt+ q+ s+ qky
  GRMZM2G108892_P01  99 PWTEEEHRTFLAGLEKLGKGDWRGIAKKFVTTRTPTQVASHAQKY 143
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.03792148IPR017930Myb domain
SuperFamilySSF466891.72E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-1895147IPR006447Myb domain, plants
SMARTSM007171.2E-1196146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1299142IPR009057Homeodomain-like
CDDcd001672.40E-1099144No hitNo description
PfamPF002491.4E-1299143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPRDLRPAGM RLFGVTIAPV PEANPPGRNP SPNPPVAARE DVMRKCKSMG NLAALGAGLD  60
GGGGCADGGV AGDGYLSDGG LMQSCGKRRR AQERKKAVPW TEEEHRTFLA GLEKLGKGDW  120
RGIAKKFVTT RTPTQVASHA QKYFLRQTNP NKKRRSSLFD MMPRELSPTP NCPVLPPSMA  180
KVHDVVAMTK QLQNSNLEGA SSSNAANVVS QVGRDLPPVP SFKATNIDSS FSKFSHMERY  240
WRTPYPSRPI PRAPEGTSSS TPVAASTAVP ASEANLTAYT STFLSQRADT PSLPPKGDPP  300
PSEDDDLELT VAPPSQQNMT NMSSQNAVGV IQVI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.792650.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G108892
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G108892_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0375200.0BT037520.1 Zea mays full-length cDNA clone ZM_BFb0175P21 mRNA, complete cds.
GenBankEU9726880.0EU972688.1 Zea mays clone 385981 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339748.10.0uncharacterized protein LOC110467540
TrEMBLA0A3L6GC190.0A0A3L6GC19_MAIZE; Transcription factor MYBS2
TrEMBLB4FK820.0B4FK82_MAIZE; MYB-related transcription factor
STRINGGRMZM2G108892_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Representative plantOGRP1297345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-35MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]