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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G106356_P01 |
Common Name | GRAS82, LOC103652715, ZEAMMB73_148287 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
GRAS |
Protein Properties |
Length: 629aa MW: 71509.2 Da PI: 6.1865 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G106356_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 283.4 | 6.7e-87 | 242 | 613 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
++l+++cA+ vs +++++a++lL+++ ++as++gd++qRla++ft++L+arl++++s l + l +++ s ++e ++a +l++e++ + k+
GRMZM2G106356_P01 242 RRLMISCAQEVSVNNHSRARELLKQIIQHASETGDATQRLAQCFTKGLEARLVGTGSLLWELLMAERPS---VVEFTKASNLYFEACCFNKV 330
7899**************************************************999999988888887...9******************* PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.fefnvlv 182
+ +I++a+ g++++Hi+D++++ G QW++L+++LasR++ p+++iT++g p+++ +e++ee++ rL + A+e+g+p f+f++ +
GRMZM2G106356_P01 331 ALSFSEMTIMQAMVGKNKLHIVDYGMQFGYQWVSLFRSLASREGALPEVKITAIGLPKPKsyPTENIEEIRCRLGRSAHEFGLPlFKFHA-I 421
********************************************************9999999********************989****.6 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+++ed +e+L+++ +E+l+Vn ++ +l+de s ++ +rd vL + +++P+v++ + ++++ ++sFl rf e l yy+alfd ++
GRMZM2G106356_P01 422 KTNWEDACIEDLNLEADEVLVVNDLFSFSTLMDEGISFDDlsPRDIVLCNISKMRPHVFIQSVYNCSY-GSSFLSRFREMLFYYMALFDIFD 512
99*********************************99998889*************************.678******************** PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
a++pres+ r+++E+++lgr++ n+++ceg + +er e++++W+ r ++aG+++++l+ ++++ ++ +++k++ + + + ++ ++l++gW++
GRMZM2G106356_P01 513 ATIPRESKSRMVLEQVVLGRSALNALSCEGVDLVERPERYRQWHTRNQRAGLRQLSLKMSTVELVRDMVKKHHHKDFLISQDGQWLLQGWRG 604
*************************************************************************888**************** PP
GRAS 365 rpLvsvSaW 373
r ++ S W
GRMZM2G106356_P01 605 RVHFAHSTW 613
********* PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 629 aa
Download sequence Send
to blast |
MATTPEEFFS KGLMEQSPPS PPVFPDLLEK PNDSSEGQHH VPNEMMLSYV SHVLMEDNDF 60 DDKFSDHPAL LQVQQPFAQI LSSPSSGTDT GNREGCNEFL HEVNVDKSML SSALSKGTDA 120 AGTFLKGMEE ANVLLPKDNN FRRDELVNQT VRENSSHSGV KKRHSRDDHL QMEIRTRKAA 180 MTVIEEPQEN LANETLDEMM LLGYKECIRD MDKLRVTTDN NKVVKQNRNS KETRDNNVVD 240 IRRLMISCAQ EVSVNNHSRA RELLKQIIQH ASETGDATQR LAQCFTKGLE ARLVGTGSLL 300 WELLMAERPS VVEFTKASNL YFEACCFNKV ALSFSEMTIM QAMVGKNKLH IVDYGMQFGY 360 QWVSLFRSLA SREGALPEVK ITAIGLPKPK SYPTENIEEI RCRLGRSAHE FGLPLFKFHA 420 IKTNWEDACI EDLNLEADEV LVVNDLFSFS TLMDEGISFD DLSPRDIVLC NISKMRPHVF 480 IQSVYNCSYG SSFLSRFREM LFYYMALFDI FDATIPRESK SRMVLEQVVL GRSALNALSC 540 EGVDLVERPE RYRQWHTRNQ RAGLRQLSLK MSTVELVRDM VKKHHHKDFL ISQDGQWLLQ 600 GWRGRVHFAH STWVAADASS RGLGSSNAE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728004 | 0.0 | KJ728004.1 Zea mays clone pUT6135 GRAS transcription factor (GRAS82) gene, partial cds. |