PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106185_P02
Common NameZm.125249
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 323aa    MW: 34600 Da    PI: 10.7468
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106185_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.8e-312376255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+
  GRMZM2G106185_P02 23 PRLRWTSELHRNFVRAVDCLGGQDKATPKLILQLMDVGGLTIAHVKSHLQMYRS 76
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3431979IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-311979IPR009057Homeodomain-like
SuperFamilySSF466892.51E-162177IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-232376IPR006447Myb domain, plants
PfamPF002498.1E-72475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGGAGGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDKATP KLILQLMDVG  60
GLTIAHVKSH LQMYRSSGQD IRRREVQPRR LGHLVEHYSF AIDEEGGPKE FVCCPHMKRA  120
EAGPEAAATA TATHESVQGN SDMGAPGTRR CGDDYTRAIP IPMGSSSSRS RRITEGLAWQ  180
WQSSGAASAA RAATAASTLR ELGFWVRGTE PFKTGRPMAN RLSPVARQLS SKSKEIKCGD  240
DGRFLFGTAT RDEAARRHSP SRRPDSIDPK AVAAVSWSSE GGACALPPPL SSTGLSARSG  300
PSGSCVFARQ RVNLDLSLSI CGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-162477356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106185
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106185_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0878110.0BT087811.1 Zea mays full-length cDNA clone ZM_BFb0210E07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151369.10.0myb-like DNA-binding domain, SHAQKYF class family protein
TrEMBLA0A1D6HFP00.0A0A1D6HFP0_MAIZE; Putative Myb family transcription factor
STRINGGRMZM2G106185_P011e-170(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.19e-27G2-like family protein