PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105137_P01
Common NameLOC100037744, Zm.92942
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 339aa    MW: 36468.4 Da    PI: 8.6827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105137_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.1e-112974146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +g WT+eEd  l++ v+ +G+++W+ I ++  + Rt+k+c++rw +
  GRMZM2G105137_P01 29 KGHWTAEEDGVLLEHVRVHGPRDWSFIRSKGLLPRTGKSCRLRWVN 74
                       789************************8876677**********87 PP
2Myb_DNA-binding42.51.5e-1385125345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  GRMZM2G105137_P01  85 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 125
                        79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1532476IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-182677IPR009057Homeodomain-like
SMARTSM007173.2E-92878IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-2728124IPR009057Homeodomain-like
PfamPF139211.6E-103282No hitNo description
CDDcd001671.54E-103276No hitNo description
PROSITE profilePS5129420.29477132IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-1878130IPR009057Homeodomain-like
SMARTSM007175.2E-1282130IPR001005SANT/Myb domain
CDDcd001671.43E-1085124No hitNo description
PfamPF002498.3E-1285125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MARPPGGARR RGGGSGRRDA AGGCEAVRKG HWTAEEDGVL LEHVRVHGPR DWSFIRSKGL  60
LPRTGKSCRL RWVNKLRPDL KTGCKFSAEE ERVVLELQAQ FGNKWARIAT YLPGRTDNDV  120
KNFWSTRQKR LARLLGTPIR RRQSSRSRSA KAPVASSLKS RPATVVPCLD QVPLEGSSTG  180
VHPCSAGAAT PFMDAHSISA ALAPYDWAGS GLASSDGALP LASDIHACSS SNAAALPPLL  240
PFDQPPCTEL GFPGLPAGWN MAPGFDNVGT MDHLAYQELL PVTQPAPMML PFFGTEYLHG  300
GAKAELPDAG PDYFFDDLPP DMFDSLDQPP RPLSPPATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25291307106B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105137
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105137_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0994202e-66AF099420.1 Zea mays clone ZmMYBIP124 R2R3MYB-domain protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669058.10.0probable transcription factor MYB58
SwissprotQ0JB892e-99MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A1D6E4210.0A0A1D6E421_MAIZE; R2R3MYB-domain protein
STRINGGRMZM2G105137_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-64MYB family protein
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]