PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G101499_P01
Common NameZm.237
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 434aa    MW: 46035.7 Da    PI: 9.0363
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G101499_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56.2e-41192268177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCsrfh lsefDe krsCr+rLa+hn+rrrk+ 
  GRMZM2G101499_P01 192 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVATGGKQQRFCQQCSRFHVLSEFDEVKRSCRKRLAEHNRRRRKPP 268
                        6*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-34188254IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.359190267IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-38191270IPR004333Transcription factor, SBP-box
PfamPF031107.1E-31193266IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MMTGRLNVAT SSSPGGDDFL FMPMQQHQPP PPPPPPYVGF EHGHGVAGGG SQRVAGGVQH  60
HLYDGLDFAA SALQFQQAEA PHLHQQQLLT LPSSLGPMAP PPPPPPLPMP MPVPGMPGDH  120
VYPALGMVKR EGGGADGRIG LNLGRRTYFS PGDMMAVDRL LMRSRLGGGG GAFGLGFGFG  180
FGGAHHLQAP PRCQAEGCKA DLSGAKHYHR RHKVCEYHAK ASVVATGGKQ QRFCQQCSRF  240
HVLSEFDEVK RSCRKRLAEH NRRRRKPPTT ASSKDAASPP ANKKPNCGSI TSSYSTDNKN  300
LNTAKSTMSS NTGSVISCLD QAAGNKQLQA RPTLTLGASP DRDQLHHQLR AMLQAQAAAG  360
GGHHHHQEQH FITSLQVHNN DGCGGGNSSS SNNNIILSCS SVCSSALPSA NGEVSDQNNG  420
NAGGMHNLFE VDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281932661184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249266KRSCRKRLAEHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.2370.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G101499
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G101499_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116160.0AJ011616.1 Zea mays mRNA for SBP-domain protein 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105116.20.0SBP-domain protein 3
SwissprotA2YFT93e-96SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE83e-96SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A1D6LQH30.0A0A1D6LQH3_MAIZE; SBP-domain protein3
STRINGGRMZM2G101499_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-47squamosa promoter binding protein-like 8