PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100794_P01
Common Namegpm817
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 443aa    MW: 48041.2 Da    PI: 8.6838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100794_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-105880426
                       ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                       + C++++rtG C++G +CkF+H+
  GRMZM2G100794_P01 58 PDCSYYMRTGMCRFGMTCKFNHP 80
                       78********************8 PP
2zf-CCCH38.81.5e-12102126327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  GRMZM2G100794_P01 102 QPECQYYLKTGTCKFGATCKFHHPR 126
                        799********************96 PP
3zf-CCCH361.2e-11149172427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +++rtG+Ck+G++CkF+H++
  GRMZM2G100794_P01 149 KECAYYLRTGQCKFGSTCKFHHPQ 172
                        68********************97 PP
4zf-CCCH39.11.3e-12309334227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+f+++tG Ck+G+ CkF+H++
  GRMZM2G100794_P01 309 DQPECQFYMKTGDCKFGSVCKFHHPR 334
                        689*********************96 PP
5zf-CCCH36.39.6e-12354380127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+f+ r+G Ck+G++CkF+H++
  GRMZM2G100794_P01 354 PGEPICSFYNRYGMCKFGPNCKFHHPM 380
                        5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-45481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.995482IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-75880IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-46081IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-699126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24499127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6102128IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5105127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7144174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99145173IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5147172IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4151171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774307335IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5307334IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6310336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5313335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366353381IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7353380IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8355380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6357381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAAPSGGGGG GAGEGSSSAA AAMTIGAHGV DQVTEAMWQM NLGDAMELGP YPERVGDPDC  60
SYYMRTGMCR FGMTCKFNHP ADRKLAVAAA RMKGEYPQRI GQPECQYYLK TGTCKFGATC  120
KFHHPREKAA MATRVQLNEL GYPLRLNEKE CAYYLRTGQC KFGSTCKFHH PQPSTMMVAV  180
RGSVYSPGQS ATSPGHHAYQ GAVTSWPLSR SASFIASPRW PGHSSYAQVI VPPGLVQVPG  240
WSPYAAQIGS SSSDDQQRTP GAAQYYTGSR QSGTPGIGDR GMFSSYQAGS VPVGLYAVQT  300
ENVFPERPDQ PECQFYMKTG DCKFGSVCKF HHPRERIIPT PNCALSPLGL PLRPGEPICS  360
FYNRYGMCKF GPNCKFHHPM GNPMYGHASS PTSEAQTSRR MLAHVPSHPE VSPDSGSGRS  420
RRIVHSDSQQ IPSVERITER EAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944070.0endosperm| glume| meristem| ovary| pedicel| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100794
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100794_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341780.0BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds.
GenBankBT0608430.0BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds.
GenBankBT0642190.0BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds.
GenBankBT0857450.0BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds.
GenBankEU9569840.0EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130819.10.0uncharacterized protein LOC100191923
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLB4FAP00.0B4FAP0_MAIZE; Zinc finger CCCH domain-containing protein 33
TrEMBLK0DG340.0K0DG34_MAIZE; C3H19 transcription factor (Fragment)
STRINGGRMZM2G100794_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]