PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G100709_P01 | ||||||||
Common Name | LOC100281236, Zm.132463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 28085.3 Da PI: 7.9324 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94 | 1.2e-29 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fv ave LGG+++AtPk+il+lm+vkg+++ h+kSHLQ+YR+ GRMZM2G100709_P01 18 PRMRWTEELHRQFVLAVECLGGQDEATPKQILQLMGVKGVSICHIKSHLQMYRS 71 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 14 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.789 | 14 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.9E-23 | 18 | 71 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.69E-16 | 18 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VLAVECLGGQ DEATPKQILQ LMGVKGVSIC 60 HIKSHLQMYR SSSSSSSSTH NQSSSLQKLT STTASNSKRV FLSREDHASQ ADGSTPASDE 120 NIYTTMLCGC SHSTPYQIRP SLEGVFRGLE QTRMLATTEK SISRPSHTEK QHTGCDLTLS 180 IGLWAEDASS NDVDGSSSIS EELMPAAPAA GARRAAAVKE ESEAAALNLD LTISSSYWLA 240 LTSDDGARRR TAGWRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-15 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-15 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-15 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-15 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-15 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G100709 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G100709_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956037 | 0.0 | EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647790.1 | 0.0 | myb-like DNA-binding domain, SHAQKYF class family protein isoform X1 | ||||
TrEMBL | B6STH2 | 0.0 | B6STH2_MAIZE; Myb-like DNA-binding domain, SHAQKYF class family protein | ||||
STRING | GRMZM2G100709_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-25 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G100709_P01 |
Entrez Gene | 100281236 |
Publications ? help Back to Top | |||
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