PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G100583_P02
Common NameLOC100285116, ZEAMMB73_313761
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 261aa    MW: 27767.6 Da    PI: 12.0128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G100583_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM385e-1211219554128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        ++ e yfF+ r         ++rat+sg+W+  gk+k+v        ++ lvg+k+ ++f       k+ a  +    Wvmheyrl
  GRMZM2G100583_P02 112 SQGERYFFAVRPAGG--VGSARRATASGRWRPAGKEKPVALPrpcggGSLLVGVKRAMAFVprrkkkKAAAAAALAIGWVMHEYRL 195
                        34588***9997754..457889*****************99899877777**********76543222333344779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.07461221IPR003441NAC domain
PfamPF023651.7E-8108195IPR003441NAC domain
SuperFamilySSF1019411.96E-19111221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLAAWRSCGS SRRGSGSAPR TRSSWCSTSG ARPWARRSPP PSSPSSATST ASTPGTPSTC  60
RPPLVHTRST TALRTTSSIH RFCQYSVVVG ERTKIASFFL CFFPTIDPDA SSQGERYFFA  120
VRPAGGVGSA RRATASGRWR PAGKEKPVAL PRPCGGGSLL VGVKRAMAFV PRRKKKKAAA  180
AAALAIGWVM HEYRLAAPLH KHGCSLAQAQ GEWVVCRVFQ KGSGRPRRRR QRPVSPSPSS  240
ASSCVTDGSS SSSSDMDEVS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RRKKKK
2224231RPRRRRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957210.0glume| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G100583
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G100583_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865710.0BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454910.0DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankEU9709060.0EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407183.10.0NAC domain-containing protein 68 isoform X2
TrEMBLA0A3L6EWT31e-102A0A3L6EWT3_MAIZE; NAC domain-containing protein 41
TrEMBLB6U0Z11e-102B6U0Z1_MAIZE; NAC domain containing protein 84
STRINGGRMZM2G100583_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-14NAC family protein