PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099622_P03
Common NameC3H15, Zm.97384
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 360aa    MW: 37921.6 Da    PI: 6.8292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099622_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08281303426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C++f+r G C+ Gd+C F+Hg
  GRMZM2G099622_P03 281 VPCPNFRRPGGCPSGDSCEFSHG 303
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.8E-1472151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1873103IPR002110Ankyrin repeat
PfamPF127963.4E-973137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.22873148IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.3E-1673151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.9237397IPR002110Ankyrin repeat
CDDcd002042.02E-1375151No hitNo description
PROSITE profilePS5008811.461108143IPR002110Ankyrin repeat
SMARTSM002480.035108143IPR002110Ankyrin repeat
PROSITE profilePS5010313.995277305IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4277304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5278306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6280305IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4310342IPR000571Zinc finger, CCCH-type
SMARTSM0035623313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVDLADLEGA GEAARSHPAA SGQRDRLAAL LELAAADDAA GFREALAGGG GQGDAAELAD  60
GVGLWYGRSK AYEPRTPLMV AATYGSVEVV SLLLGLGCVD VNRRPGVDGA TPLHCAASGG  120
SRNAVAVVKL LLAAGACPVT PDSAGRLPAD VILPPASPDA LGDLDMLLGR RRGLAVATSV  180
PSLSSSPPLS TSPDEGNRSP SSRSSSLSPI TVDRAKKEYP VDPTLPDIKS SVYASDEFRM  240
FAFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKHPYTA VPCPNFRRPG GCPSGDSCEF  300
SHGVFESWLH PSQYRTRPCK EGAACARRIC FFAHDEDELR HVPHNSGAGL LSPRASSSID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gmr_A7e-121915112142OR266 DE NOVO PROTEIN
4gmr_B7e-121915112142OR266 DE NOVO PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.845530.0endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099622
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099622_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279930.0KJ727993.1 Zea mays clone pUT6113 C3H transcription factor (C3H15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347968.10.0uncharacterized protein LOC100280326
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A060D8120.0A0A060D812_MAIZE; C3H transcription factor (Fragment)
TrEMBLA0A1D6EZ540.0A0A1D6EZ54_MAIZE; Zinc finger CCCH domain-containing protein 56
STRINGGRMZM2G099622_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.15e-84C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]