PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099593_P01
Common NameLOC103647154, Zm.9922
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 350aa    MW: 37606.2 Da    PI: 6.4261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099593_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.88.3e-22131195259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 
                        dDgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v++ ++d +    ++++tY+++H+++
  GRMZM2G099593_P01 131 DDGYEWRKYGEKKINGTLFTRSYFRCTYKddaGCLATKHVQQMDSDDNssppMFHVTYHNDHTCS 195
                        8***************************99999********988764433339**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-23121196IPR003657WRKY domain
SuperFamilySSF1182903.4E-21124195IPR003657WRKY domain
SMARTSM007748.5E-32130196IPR003657WRKY domain
PfamPF031062.7E-23131194IPR003657WRKY domain
PROSITE profilePS5081117.041131193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MACVADRQAA VREVAQVYEL IKLQQPLLLL HSSSSHLAQS LLGKALRALN VALSVMNQQQ  60
PPPPPPAVAP VTVVVVKAEP HLSPPSPASA DSEATAPPAR RGAKRTRRSA APVGGKKNSS  120
SWATLTAVPY DDGYEWRKYG EKKINGTLFT RSYFRCTYKD DAGCLATKHV QQMDSDDNSS  180
PPMFHVTYHN DHTCSSAKAA AKANTGSSSN NNSHLAALLA DCCDGSGCNK GLTTTTINGH  240
AAAAAAAMNM NMKQEPSLLP PPPPLAEPPS ACFPYDQMPQ QCHQLLFPVS MEQQFPGNGE  300
EIPSAAGSCI SGETSWDGYY YSGDMAAAED DRFHDLERFL LGDSFMDYQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-13131194968OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099593
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099593_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669939.10.0probable WRKY transcription factor 70
TrEMBLA0A1D6EIZ90.0A0A1D6EIZ9_MAIZE; Putative WRKY transcription factor 30
STRINGGRMZM2G099593_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Representative plantOGRP1362235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-19WRKY DNA-binding protein 70