PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G091656_P01
Common NameLOC103654627, ZEAMMB73_542117, Zm.132894
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 473aa    MW: 51700.4 Da    PI: 4.4973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G091656_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.61.3e-661024712374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         +lLl++A+av++gd +la a+L++l+ l as  ++    ++ Rla +f+ +L++r+ + +s +y    p +      +  ++a+++ +e+s
  GRMZM2G091656_P01 102 SDLLLTVADAVEAGDSSLALAVLSKLNGLlASTCDNapssSFGRLACHFALGLQSRIPGACSPCY---LPDPV----PAGIMSAHQMIQELS 186
                        689************************996555444666699*****************777777...23333....356889999****** PP

               GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                        P++kf+h+taNqaIl+a+ g+  +H+iDf++++G+QWp+L+  La   +    l +T++   +       + ++ ++ ++rL++fAe+l++p
  GRMZM2G091656_P01 187 PYVKFAHFTANQAILDATTGDMDIHVIDFNLGEGVQWPSLMSDLARLGG--KALHLTAIITDAVYnddddDDNTHQTAARRLSEFAESLNLP 276
                        *********************************************8544..57888887764433566756777777889************ PP

               GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse......sFlerflea 260
                        f++n l +++ edl  ++++ + +  ++V++     +l  +s+s  +    +L + ++l+Pk vvv+e e+ + ++e      sF+e f+ea
  GRMZM2G091656_P01 277 FRYNSLRVRHAEDL--DDFSRNCEGPVVVSCDT--TNLCYRSGSRLQ--MLLLVCARKLQPKSVVVIEDELVRiGKEaclsqaSFVEFFFEA 362
                        *****988888877..78888888999999988..666667777777..799*****************95443444555555********* PP

               GRAS 261 leyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                        l++++++f+sl++ +++ s     + vE+ ++g++i++ v + g+       tle   +     GF + +ls  + +qa +l+  ++ + + 
  GRMZM2G091656_P01 363 LHHFTTVFESLSSCFSSSSsrACLRLVEKGMVGPRIQDFVGMYGSV------TLEAAAAPKALEGFVSCELSACNIAQATMLVGLFS-RSFG 447
                        ***********999988885566789*******************9......444444555678***********************.66** PP

               GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                        v +e+g l l+Wk+rpL+svSaW+
  GRMZM2G091656_P01 448 VAHEKGRLQLCWKSRPLISVSAWT 471
                        ***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.66975452IPR005202Transcription factor GRAS
PfamPF035144.5E-64102471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
METISYPCSP LIFFPTHEES SHSLWSPQLN LHENATIPAD PSPDAREDRE FFDTIAIGSS  60
DSHDQYAFEA DVFTHCDERF LCQESANLAA LQDELMEENS LSDLLLTVAD AVEAGDSSLA  120
LAVLSKLNGL LASTCDNAPS SSFGRLACHF ALGLQSRIPG ACSPCYLPDP VPAGIMSAHQ  180
MIQELSPYVK FAHFTANQAI LDATTGDMDI HVIDFNLGEG VQWPSLMSDL ARLGGKALHL  240
TAIITDAVYN DDDDDDNTHQ TAARRLSEFA ESLNLPFRYN SLRVRHAEDL DDFSRNCEGP  300
VVVSCDTTNL CYRSGSRLQM LLLVCARKLQ PKSVVVIEDE LVRIGKEACL SQASFVEFFF  360
EALHHFTTVF ESLSSCFSSS SSRACLRLVE KGMVGPRIQD FVGMYGSVTL EAAAAPKALE  420
GFVSCELSAC NIAQATMLVG LFSRSFGVAH EKGRLQLCWK SRPLISVSAW TPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-3714047252379Protein SCARECROW
5b3h_D5e-3714047252379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G091656
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G091656_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715780.0EU971578.1 Zea mays clone 367514 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679695.10.0nodulation-signaling pathway 2 protein
TrEMBLK7UPJ50.0K7UPJ5_MAIZE; Scarecrow-like protein 26
STRINGGRMZM2G091656_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Representative plantOGRP8945915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-36GRAS family protein