PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G090230_P01
Common NameGLK41, LOC100279589, ZEAMMB73_415858
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 328aa    MW: 35491.9 Da    PI: 8.4322
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G090230_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.2e-292073255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       pr++W+ +LH++Fv+a++ LGG++kAtPk il++m   gLt++hvkSHLQ+YR 
  GRMZM2G090230_P01 20 PRIKWSADLHRSFVQAIDCLGGQHKATPKLILQFMATRGLTISHVKSHLQMYRA 73
                       9****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.0121676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-261674IPR009057Homeodomain-like
SuperFamilySSF466891.59E-131773IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-222073IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGGGGRNGTV VRRYIRSKEP RIKWSADLHR SFVQAIDCLG GQHKATPKLI LQFMATRGLT  60
ISHVKSHLQM YRAARLGAGR RGMQAQLLQR RHSCTGDEQE EFLRPPPPLK RARMGYESMQ  120
GLGSHGVSDA RTAAAAGGLY CIDDYMQAMA AMGWRIKEEG LTRWQWQRRD AAAPSDLQAM  180
GCLVQEPDPF KQMRRPEARR LGSALRNQQD DSSEEDGNGC PLLSSSSFSN AANDDEPSDE  240
QCSLSLSLGL DTKGARAMAT SSPSGESSCI LTAASPARRS SSDCCCSGHS GCFVGPGVSL  300
ELSLSISGSY LDHSDSVHRP GPAGCSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-162175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-162175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-162175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-162175357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.432640.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G090230
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G090230_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545230.0BT054523.1 Zea mays full-length cDNA clone ZM_BFc0129A18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347916.10.0uncharacterized protein LOC100279589
TrEMBLA0A1D6JCC00.0A0A1D6JCC0_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G090230_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.17e-24G2-like family protein