PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088427_P01
Common NameLOC103643731
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 337aa    MW: 38844.2 Da    PI: 10.565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088427_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.2e-20361171299
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++rlv+p kfa+++ gk e+   ++le++ g +++v++   ++ gr+++++GWk+Fv+a++Lk  D +vFk+dg +++ ++v +f+ 
  GRMZM2G088427_P01  36 FHKRLVIPVKFAKKFRGKVER--NIKLESLGGYTFDVQV--AQNLGRIMFQSGWKSFVSAHDLKMFDLLVFKYDG-MSR-MKVLIFDP 117
                        4678***********777555..6***************..********************************98.444.69999885 PP
2B339.97.5e-132683313799
                        EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++ + +g+sWev l +rk +g+   l+ GW eF+++n+L+ gD+++F+  ++++ +++v+++r+
  GRMZM2G088427_P01 268 VILQCHGKSWEVILEVRKDQGEsKRLRIGWAEFARDNNLQLGDICLFEPLKTMKYTMNVHIVRR 331
                        556679********98666666699***********************9999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2222120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-2323120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.42125118IPR003340B3 DNA binding domain
CDDcd100172.15E-2026116No hitNo description
SMARTSM010193.0E-1228118IPR003340B3 DNA binding domain
PfamPF023622.2E-1736116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-19229331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-17229330IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-12232330No hitNo description
PROSITE profilePS5086311.815235332IPR003340B3 DNA binding domain
SMARTSM010192.4E-5236332IPR003340B3 DNA binding domain
PfamPF023625.9E-11247331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRKPSNGCKE RDVIYHRNDH TDDNGKHFFK ILIGDFHKRL VIPVKFAKKF RGKVERNIKL  60
ESLGGYTFDV QVAQNLGRIM FQSGWKSFVS AHDLKMFDLL VFKYDGMSRM KVLIFDPSGC  120
EKVPPFFVTK NAMSGGRKRE EPQEPLDISS SYADLPMKTP ETKKKARKQR DRSRINISPC  180
RSISNSSGGM RSSEDDEAHS VPSCILPRGT ILDSMQRRKV KERLRAICSE IPIYVFVVKK  240
SNIFGRSQDM VFSRKYPDVC LPFKSGAVIL QCHGKSWEVI LEVRKDQGES KRLRIGWAEF  300
ARDNNLQLGD ICLFEPLKTM KYTMNVHIVR RRVRSGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.330720.0embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088427
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088427_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665125.10.0putative B3 domain-containing protein Os03g0621600
RefseqXP_020402857.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A317Y8C50.0A0A317Y8C5_MAIZE; Putative B3 domain-containing protein
STRINGGRMZM2G088427_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-29B3 family protein