PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087804_P01
Common NameLOC542493
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 459aa    MW: 49027.5 Da    PI: 7.0936
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087804_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27182236156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+ ++Lt+++++SHLQkYR++
  GRMZM2G087804_P01 182 KRKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGTDCLTRHNIASHLQKYRSH 236
                        5799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.772179238IPR017930Myb domain
SuperFamilySSF466891.51E-17182239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-26182239IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-27182236IPR006447Myb domain, plants
PfamPF002495.4E-7185234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLEVSTLRGP TSSGSKAEQH CGGGGGFVGD HHVVFPTSGD CFAMVDDNLL DYIDFSCDVP  60
FFDADGDILP DLEVDTTELL AEFSSTPPAD DLLAVAVFGA DDQPAAAVAQ EKPSSSLEQT  120
CGDDKGVAVA AARRKLQTTT TTTTTEEEDS SPAGSGANKS SASAEGHSSK KKSAGKNSNG  180
GKRKVDWTPE LHRRFVQAVE QLGIDKAVPS RILEIMGTDC LTRHNIASHL QKYRSHRKHL  240
MAREAEAATW AQKRHMYAPP APRTTTTTDA ARPPWVVPTT IGFPPPRFCR PLHVWGHPPP  300
HAAAAEAAAA TPMLPVWPRH LAPPRHLAPW AHPTPVDPAF WHQQYSAARK WGPQAAAVTQ  360
GTPCVPLPRF PVPHPIYSRP AMVPPPPSTT KLAQLHLELQ AHPSKESIDA AIGDVLVKPW  420
LPLPLGLKPP SLDSVMSELH KQGVPKIPPA AATTTGATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14182234557ARR10-B
5lxu_A2e-14187238657Transcription factor LUX
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087804
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Galpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size
    [PMID: 24025774]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087804_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185790.0AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds.
GenBankBT0628380.0BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673438.10.0golden plant 2 isoform X1
SwissprotQ5NAN51e-110GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A1D6MES10.0A0A1D6MES1_MAIZE; Golden plant2
STRINGGRMZM2G087804_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-59GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Rossini L,Cribb L,Martin DJ,Langdale JA
    The maize golden2 gene defines a novel class of transcriptional regulators in plants.
    Plant Cell, 2001. 13(5): p. 1231-44
    [PMID:11340194]
  2. Cribb L,Hall LN,Langdale JA
    Four mutant alleles elucidate the role of the G2 protein in the development of C(4) and C(3) photosynthesizing maize tissues.
    Genetics, 2001. 159(2): p. 787-97
    [PMID:11606553]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Bommert P,Je BI,Goldshmidt A,Jackson D
    The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size.
    Nature, 2013. 502(7472): p. 555-8
    [PMID:24025774]