PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087032_P01
Common NameLOC100194377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 430aa    MW: 46825.8 Da    PI: 8.498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087032_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-1074100127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C +++rtG C++G +C+F+H+p
  GRMZM2G087032_P01  74 PGEPDCTYYLRTGLCRFGMSCRFNHPP 100
                        5789*********************97 PP
2zf-CCCH38.12.6e-12121145327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tGtCk+G++CkF+H++
  GRMZM2G087032_P01 121 QPECQYYLKTGTCKFGPTCKFHHPR 145
                        799********************96 PP
3zf-CCCH30.65.6e-10167191327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG+Cky ++CkF+H++
  GRMZM2G087032_P01 167 EKECAYYLKTGHCKYANTCKFHHPE 191
                        679********************96 PP
4zf-CCCH39.68.5e-13318343227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Ck+G+ CkF+H++
  GRMZM2G087032_P01 318 DEPECQYYMKTGDCKFGAVCKFHHPR 343
                        789*********************96 PP
5zf-CCCH41.81.7e-13363388126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++elC+f++r+G+Ck+G++CkF H+
  GRMZM2G087032_P01 363 PGEELCKFYSRYGICKFGANCKFDHP 388
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.97173101IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-573100IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-875100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-578101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-47999IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751118146IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5118145IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10121145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5124146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713164192IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5165191IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7167191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4170190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695316344IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5316343IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5319343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741362390IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7362389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6364388IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10364388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5366387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDDAGRPPPH APVAVTASAS ASATAAPAPP QPSATAAVDR SSPDPDALYE EGMWQQMAMD  60
SGATMQPGSY PERPGEPDCT YYLRTGLCRF GMSCRFNHPP DRNLAIASAR MKGEYPERAG  120
QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTSG YPLRPNEKEC AYYLKTGHCK  180
YANTCKFHHP ELFNVVPSSR GSPIYTSVHS SASAGPQSYT GTMPSWAFPR ASFIPSPRWQ  240
SPSNYAPMIV PQGLVQMQSW NSYTGQLQSP GAQQTYGSSQ QGEASTGNQG MLSPYRPSSF  300
PVPQYALQRE NVFPERPDEP ECQYYMKTGD CKFGAVCKFH HPRVRSLPPP DCVLSPMGLP  360
LRPGEELCKF YSRYGICKFG ANCKFDHPTV VAPMVYAYGF SASASPASAS TNVPMARRLL  420
GSPPGSGYTS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.971610.0endosperm| glume| leaf| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087032
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087032_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663690.0EU966369.1 Zea mays clone 293934 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132883.10.0uncharacterized protein LOC100194377
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1D6N3820.0A0A1D6N382_MAIZE; Zinc finger CCCH domain-containing protein 33
STRINGGRMZM2G087032_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]