PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G085964_P02 | ||||||||
Common Name | cl15281_1(600) | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 19844.5 Da PI: 8.7283 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 52 | 100 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g GRMZM2G085964_P02 52 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRG 100 9*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-32 | 51 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.895 | 51 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-27 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MCGGAIIADF VPAGARRPAT DDTMSASILS GEDHPELPLP LPAPAPGRKT AYRGIRRRPW 60 GRWAAEIRDP RKGARVWLGT YATPEDAARA YDVAAREIRG PKAKLNFPPA VGGGARAPAP 120 AAAKRRRKSA ATEESSASSP PPPAAAAAVV VAGGGEEALR DCMSGLEAFL GLQNADEGGG 180 VEAWDAVDLM LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 52 | 114 | 6 | 69 | ATERF1 |
3gcc_A | 5e-21 | 52 | 114 | 6 | 69 | ATERF1 |
5wx9_A | 2e-20 | 52 | 115 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.6756 | 0.0 | endosperm| meristem| root| shoot| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G085964 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G085964_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064397 | 0.0 | BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146860.1 | 1e-131 | uncharacterized protein LOC100280468 | ||||
TrEMBL | C0P7X8 | 1e-129 | C0P7X8_MAIZE; Uncharacterized protein | ||||
STRING | Pavir.J05942.1.p | 1e-79 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G085964_P02 |
Entrez Gene | 100280468 |
Publications ? help Back to Top | |||
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