PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G082264_P01 | ||||||||
Common Name | mwp1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 477aa MW: 48352.4 Da PI: 7.5175 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 282 | 335 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GRMZM2G082264_P01 282 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 335 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-15 | 279 | 336 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 280 | 336 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 282 | 335 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-7 | 283 | 334 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MEASSAASPD LSLHISLPSS AAGSGPSGRR AAVGGGTGGG GGAGGDPWRR LNGSTASTEL 60 SLSPPVEQEH ADALPWRHRP SAAAASSAAT TSAGATLMPA MPMLQPLDGG GGLGAGAGAG 120 GGASVALPIR GIPIYNGPGG FPFLPPASGA DGAPLHHHQQ QQKLGFYGSY HPSTWPSSLG 180 STSPSPSPLA PGTPPSPLLD PASAAFLSPA AHHHHRMLSA SGRLNGMLTD TLRGYGAGGV 240 GGLGGIVGGH HHHHHHLHGA QPFGLGSRFM PKLPAKRSMR APRMRWTSTL HARFVHAVEL 300 LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKSTD KPAASSGAND GGSGDEDFAG 360 GGQAGSGGEN MCARPFGEHR STSEGAASSV GGGGGGDMDQ SSAGNGSTRW SNSSRDPWLS 420 SNSCNMDAHR LAALSSPIEN GEPCRSSSSQ VSNQELMSSP SLEFTLGRPD WQGTDHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 283 | 337 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 283 | 337 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 283 | 337 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 283 | 337 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.64587 | 0.0 | endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G082264 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G082264_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU925398 | 0.0 | EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds. | |||
GenBank | EU954667 | 0.0 | EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353566.1 | 0.0 | uncharacterized protein LOC100280930 isoform 1 | ||||
Swissprot | Q0J235 | 1e-158 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A1D6I3X2 | 0.0 | A0A1D6I3X2_MAIZE; Milkweed pod1 | ||||
TrEMBL | B5LZ60 | 0.0 | B5LZ60_MAIZE; Milkweed pod1 | ||||
STRING | GRMZM2G082264_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 | Representative plant | OGRP570 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 6e-50 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G082264_P01 |
Entrez Gene | 100280930 |
Publications ? help Back to Top | |||
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