PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G077789_P01 | ||||||||
Common Name | LOC100384757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 27930.6 Da PI: 9.0354 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +v+ +G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G077789_P01 14 KGAWTKEEDERLVAYVRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia ++ gRt++++k++w+++ GRMZM2G077789_P01 67 RGNFTDDEDELIIRLHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.782 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.1 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLVAYVR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDELIIR LHSLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRPLG AGADAAAPPG VVAHRALLHR AGAAPVELAV KPAPAESSDD GGRSSASASS 180 GGGASVEEPR CPDLNLDLSV GPPAAADTPT SQSQLAVCLC YRLGLRAGEA CSCQAQADNA 240 GQQRFRFSDF RTERRVVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 7e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G077789 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G077789_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF372521 | 0.0 | EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds. | |||
GenBank | HF679428 | 0.0 | HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344512.1 | 0.0 | uncharacterized protein LOC100384757 isoform 1 | ||||
Swissprot | P81393 | 2e-97 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1D6M5K3 | 0.0 | A0A1D6M5K3_MAIZE; Transcription repressor MYB6 | ||||
STRING | GRMZM2G077789_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 6e-89 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G077789_P01 |
Publications ? help Back to Top | |||
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