PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G075122_P02
Common NameIDP157
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 369aa    MW: 40016.8 Da    PI: 6.0123
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G075122_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.98.6e-3579178297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 
                        lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  ++f+++h+q if
  GRMZM2G075122_P02  79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFTFRSPHEQAIF 170
                        79************************99877778***************************************8999*************** PP

             DUF573  90 elskkiWg 97 
                        e+++ iW+
  GRMZM2G075122_P02 171 EIARNIWR 178
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-3180177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPPTGDDPSA AAGISFPDAG GGGDSEDGDF AGSHLLDPTD PGLPNPTTSS ATGLPHAIPA  60
AGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED  120
MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRESGATFT FRSPHEQAIF EIARNIWRPA  180
NKHGRDPSAD SDDEDAAAAA ATQIPANTSP NGEVRSPSSA RQRRRRRATE FTPATNMLQP  240
PQPVPLSVSV PVKTDDSLPA QPQTPMPTMD GSEPVRLPVV SPQSGVSDAE KTCLTPLFRE  300
IIHAAMNVGA NPFGAKLPEP PLGLPLPMEG EKWRRQRILE LEVYLKRIEL LQDQAKATLE  360
ELKSSTPGT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.836230.0meristem| pollen| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G075122
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G075122_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341430.0BT034143.1 Zea mays full-length cDNA clone ZM_BFc0032C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130793.10.0uncharacterized protein LOC100191897
TrEMBLB4FAK50.0B4FAK5_MAIZE; Putative transcription factor
TrEMBLK0D9S50.0K0D9S5_MAIZE; GBP6 GeBP type transcription factor (Fragment)
STRINGGRMZM2G075122_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-35DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]