PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G074438_P01 | ||||||||
Common Name | LOC103629727, Zm.130724 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 39510.8 Da PI: 9.0309 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.6e-09 | 167 | 214 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq GRMZM2G074438_P01 167 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 214 8*************************94....22445556666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.90E-10 | 161 | 218 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-15 | 161 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.627 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-14 | 163 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 167 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-8 | 169 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MRHASPPQEL PAAGREIQAA LAPANGNAAG ARGGGGSFTA LLGLPTPQAM ELLLPRTTPP 60 ALALAPAAAP APTPTFPSDP HLVDRAGRFS TFAPPSPPSP SPTQQPPPPP PAAVAGKRKA 120 DPVDRASKGK AAKKGKTAEE KPAAAGGEDE KPAYVHVRAR RGQATDSHSL AERARREKIN 180 ARMELLKELV PGCSKVSGTA LVLDEIINHV QSLQRQVEYL SMRLATVNPR GDFGGLDSFL 240 TTECGRIASF NCKNGIDLEQ VTWPEMGVHG ARQLMQLQQQ FWHGDLAHPH QVASQWEKRG 300 DGHPPVFSNS SPSLFGYDLT SSGKPCTQSY ITFLNEFSCL SLTSHITAWL APQLLSLSLS 360 RQCSLENKVY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18864 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G074438 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G074438_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040729 | 0.0 | BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394963.1 | 0.0 | transcription factor bHLH48 isoform X1 | ||||
Swissprot | Q8VZ02 | 2e-62 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A1D6LRB4 | 0.0 | A0A1D6LRB4_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
TrEMBL | A0A3L6E894 | 0.0 | A0A3L6E894_MAIZE; Transcription factor bHLH48 | ||||
STRING | GRMZM2G074438_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6932 | 27 | 35 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 2e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G074438_P01 |
Entrez Gene | 103629727 |
Publications ? help Back to Top | |||
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