PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G070211_P01
Common NameLOC100280700, WRKY102, Zm.29590
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 354aa    MW: 38044.1 Da    PI: 10.3114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G070211_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31287344359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  GRMZM2G070211_P01 287 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSAMLIVTYEGEHNHT 344
                        9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-17237283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33273344IPR003657WRKY domain
PROSITE profilePS5081129.964280346IPR003657WRKY domain
SuperFamilySSF1182901.31E-26283344IPR003657WRKY domain
SMARTSM007742.8E-37285345IPR003657WRKY domain
PfamPF031061.5E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEEVEEANRE AVESCHRVLA LLSQPHDPAQ ARSIALGTDE ACARFRKVVS LLSNGGAGLG  60
EAGPSCGSAS ASRPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPST TSAQVYPRTG  120
ALVDAQSVHP LGVGGPPKLV QPLSAHFQFG SVPARYQFPN QQQQKLHAEM FKRSNSGVNL  180
KFESASGTAG TMSSARSFLS SLSMDGSVAS LDAKSSSFHL IGGPAMSDPL NAQQPPRRRC  240
TGRGEDGTGK CAVTGRCHCS KRSRKLRVKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERCVDDS AMLIVTYEGE HNHTRMPTTQ SAQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21278347775WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.295900.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G070211
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G070211_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698720.0BT069872.1 Zea mays full-length cDNA clone ZM_BFb0311A08 mRNA, complete cds.
GenBankBT0873360.0BT087336.1 Zea mays full-length cDNA clone ZM_BFb0044E21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147091.20.0uncharacterized protein LOC100280700
RefseqXP_008673607.10.0WRKY transcription factor 21 isoform X1
SwissprotQ93WU62e-91WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLC0PNK30.0C0PNK3_MAIZE; Putative WRKY transcription factor 74
STRINGGRMZM2G070211_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-67WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]