PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G070034_P02 | ||||||||
Common Name | si486022a09, ZEAMMB73_646271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25532.2 Da PI: 9.8015 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaev +++fs++gklye++s GRMZM2G070034_P02 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLVVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 65 | 2.7e-22 | 78 | 170 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++++ +++ ++ + ++ L +++e L++++R +lGe+Le++s++eL++Le +L ksl iR kK++ll +qi++l++ke+ l ++nk+Lr GRMZM2G070034_P02 78 VNNKTVQQDIQQVKADAVSLASRLEALEKTKRMFLGENLEECSIEELHNLEVKLAKSLHVIRGKKTQLLEQQISKLKEKERTLLQDNKELRD 169 4455778899********************************************************************************98 PP K-box 97 k 97 k GRMZM2G070034_P02 170 K 170 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.272 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.60E-40 | 3 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.265 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVRGKTELKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLVVFSP RGKLYEFASA 60 ASLQKTIDRY RTYTRENVNN KTVQQDIQQV KADAVSLASR LEALEKTKRM FLGENLEECS 120 IEELHNLEVK LAKSLHVIRG KKTQLLEQQI SKLKEKERTL LQDNKELRDK RNLQSPPEAP 180 PDLNRCVPPW PRSLPAPSND MDVETELYIG LPGRERSSNR DSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 1e-16 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 1e-16 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 1e-16 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.15830 | 0.0 | endosperm| meristem| ovary| silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G070034 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G070034_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064823 | 0.0 | BT064823.1 Zea mays full-length cDNA clone ZM_BFb0180I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658827.1 | 1e-163 | uncharacterized protein LOC100382583 isoform X1 | ||||
Swissprot | A2Z9Q7 | 1e-107 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | C0P954 | 1e-160 | C0P954_MAIZE; MADS transcription factor | ||||
STRING | GRMZM2G070034_P01 | 1e-161 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-68 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G070034_P02 |
Entrez Gene | 100382583 |