PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G069028_P01
Common NameNS1, WOX3A
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 262aa    MW: 27836.1 Da    PI: 8.1611
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G069028_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.4e-21666257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+++t+eql +Lee++++  r+p+a+e+++++++l    +++ ++V++WFqN++a+e++
  GRMZM2G069028_P01  6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66
                       58*****************99**************************************97 PP
2Wus_type_Homeobox1215e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+
  GRMZM2G069028_P01  5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67
                       689***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.463267IPR001356Homeobox domain
SMARTSM003896.8E-6471IPR001356Homeobox domain
SuperFamilySSF466891.37E-11470IPR009057Homeodomain-like
CDDcd000862.54E-4560No hitNo description
PfamPF000461.8E-18766IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH  60
KARERQRLRR RLCARHQQQY AQQQATAAAP ASSPNSSATV PSLAAGGSSA GVHPAVMQLH  120
HHQHPYATNF MPHQLGYMGQ QVATVPPVLN PAAAGMVDLA AARAGGGNKA TAAGSGAYGG  180
GAGLYNSCSS NQLEEWEATD AMEHCDASCG AASGSSDEGG ALQLPPCCRR PLKTLDLFPT  240
KSTGLKDECS SSKSSSCSTS TN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G069028
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in tissues enriched for shoot meristems and young lateral organ primordia. First expressed in lateral domains of shoot meristems. It is then expressed in the margins of young lateral organ primordia. Not expressed in roots, seedling leaves or fully expanded coleoptiles. Also expressed in vegetative shoot apices (five leaf primordia and the SAM) and in the male inflorescence. Expressed at low level in the female inflorescence. {ECO:0000269|PubMed:15169755}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G069028_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5365780.0AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene).
GenBankBT0661200.0BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105160.10.0WUSCHEL-related homeobox 3A
SwissprotQ70UV10.0WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBLA0A3L6G2S10.0A0A3L6G2S1_MAIZE; WUSCHEL-related homeobox 3A
TrEMBLC0PCV10.0C0PCV1_MAIZE; WUSCHEL-related homeobox 3A
TrEMBLK4JBS60.0K4JBS6_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM2G069028_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Representative plantOGRP55801121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-34WOX family protein
Publications ? help Back to Top
  1. Scanlon MJ
    NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development.
    Development, 2000. 127(21): p. 4573-85
    [PMID:11023861]
  2. Nardmann J,Ji J,Werr W,Scanlon MJ
    The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems.
    Development, 2004. 131(12): p. 2827-39
    [PMID:15169755]