PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G066057_P01
Common NameLOC103636726, ZEAMMB73_605816, Zm.43674
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 325aa    MW: 33721.6 Da    PI: 4.9096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G066057_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08243284955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + RR++i +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  GRMZM2G066057_P01 243 AKVRREKIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 284
                        589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12235292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-12236294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-11236288No hitNo description
SMARTSM003532.3E-10240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5244284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAQASKRSAF LRPVMYDDDE PSSISMSLEL FGYHNGGVGV VVDDGDEAAD GGSASALSLQ  60
LAFDDDSFVK GGCECDDAGG GGASAADYYY YGSWAGAYGG SGATSSGSNS SVLSFEQAGS  120
GGGQRHHLVY GEDGCALWMD DAGAGMVVEH PPAQQQQQHG SGCDFGLIGS SPDDAGLPIQ  180
LEPGTVQLPA KAPPHKRARR DGDQVQAAAA AKKQCGGVGA RMKSKQAKLA APAPTKDPQS  240
VAAKVRREKI AEKLKVLQDL VPNGTKVDLV TMLEKAITYV KFLQLQVKVL AADEFWPAQG  300
GKAPDLSQVK DALDAILSSS QQCPK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G066057
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G066057_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657289.10.0transcription factor BHLH089 isoform X2
TrEMBLK7VPC50.0K7VPC5_MAIZE; Transcription factor bHLH83
STRINGGRMZM2G066057_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.16e-48ROOT HAIR DEFECTIVE6