PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G064630_P01
Common NameLOC100381853
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 655aa    MW: 71817.9 Da    PI: 4.5436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G064630_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.5e-132872348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +W+ eEd  l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  GRMZM2G064630_P01 28 SWSSEEDGVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 72
                       6****************************9.**************7 PP
2Myb_DNA-binding409e-1378121146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g W+ eEd ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  GRMZM2G064630_P01  78 KGGWSREEDMLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 121
                        688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.742176IPR017930Myb domain
SuperFamilySSF466891.01E-2525119IPR009057Homeodomain-like
SMARTSM007171.1E-102574IPR001005SANT/Myb domain
CDDcd001672.73E-112872No hitNo description
Gene3DG3DSA:1.10.10.602.2E-182979IPR009057Homeodomain-like
PfamPF139212.6E-142989No hitNo description
SMARTSM007173.9E-1377125IPR001005SANT/Myb domain
PROSITE profilePS5129416.65277127IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-1980126IPR009057Homeodomain-like
CDDcd001672.19E-981122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATGADLTSP TGAAAAAAAA RKDRHIVSWS SEEDGVLRAQ IALHGTDNWT IIAAQFKDKT  60
ARQCRRRWYN YLNSECKKGG WSREEDMLLC EAQKVLGNKW TEIAKVVSGR TDNAVKNRFS  120
TLCKRRAKDD ELYQENGVPC SNTNAKKVLT ETGRLTPGGA GSLVHIKQTR SSSYNLKENL  180
VPNMKLFELE KSTQDARQPL ATISSNNQDN VNTVKSQNLV PTTKQLLGPE QHCVKREGNF  240
LKKDDPKVAT LLQQSDFLCS LATKIKSDNT SKSMDEAWQQ LQDHLVKKEH NKVPENSGSE  300
IASLLEELDD LIVDPYERKD EDEQKLSEHN GRTDVDNDHC NGSSQTSIVV TTNMVPEEMM  360
GDCPVDNCNE DSSLCRKVLS GSTEPCPGAK MTGCGNLSED QVAEGSVLQR VESISPVITD  420
IDDLLVDPYE SEAEDEEKSG EQNGQIDVHA EQCFGSSQTI IEVISDMAPD EVMETCSADN  480
REEHSSICRN VLSGSMAPCP GAEIPTSEKM SELAEDSRLQ CMEFASPVLA NFASKECGET  540
PEPQVLNEIV EDSRLQCIEF NSPAHTILPD KTGAENFASP SFDVVAKDSK PPSLEFTSPA  600
HTVATFQPYA DGIPTPKFTA SERSFLLSVL ELTSPGSRPE TSQQPSCKRA LLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-292912610107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.847700.0endosperm| meristem| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G064630
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G064630_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0190050.0BT019005.1 Zea mays clone Contig495.F mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348476.10.0uncharacterized protein LOC100381853
TrEMBLA0A1D6F2430.0A0A1D6F243_MAIZE; Myb domain protein 88
TrEMBLA0A3L6G4900.0A0A3L6G490_MAIZE; Transcription factor MYB124
STRINGGRMZM2G064630_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Representative plantOGRP54161421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-84MYB family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]